miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 13118 0.68 0.519706
Target:  5'- gCGUCGGCGGCCG-CG-GGGC-GCgugUGGu -3'
miRNA:   3'- -GCAGCUGUCGGCgGCgCCCGaCG---ACC- -5'
23573 3' -62.2 NC_005261.1 + 13483 0.74 0.228399
Target:  5'- ---aGGCGGCCGCUGC-GGCUGCgGGg -3'
miRNA:   3'- gcagCUGUCGGCGGCGcCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 13655 0.67 0.55775
Target:  5'- gCGcCGuGCcGCCGCCGCGGGggggGCgcgGGg -3'
miRNA:   3'- -GCaGC-UGuCGGCGGCGCCCga--CGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 13960 0.67 0.548155
Target:  5'- uGUCG-CGGCCggGCgCGCGGGCgGCg-- -3'
miRNA:   3'- gCAGCuGUCGG--CG-GCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 14001 0.7 0.396449
Target:  5'- cCG-CGGCGGCgGU--UGGGCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgcGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 15017 0.66 0.634739
Target:  5'- ---aGGCGGCagGCCGCGcuuacgcGGCgGCUGGg -3'
miRNA:   3'- gcagCUGUCGg-CGGCGC-------CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 15025 0.75 0.212867
Target:  5'- uGUCGGCGGgUGCCGgGGGCguaGCgGGg -3'
miRNA:   3'- gCAGCUGUCgGCGGCgCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 15401 0.66 0.606319
Target:  5'- aGUaUGACcgcGCCGCagCGCGGG-UGCUGGc -3'
miRNA:   3'- gCA-GCUGu--CGGCG--GCGCCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 15641 0.67 0.55775
Target:  5'- aCG-CGGCguacaaGGCCGCUGCGGcGgaGCUGc -3'
miRNA:   3'- -GCaGCUG------UCGGCGGCGCC-CgaCGACc -5'
23573 3' -62.2 NC_005261.1 + 16244 0.69 0.44706
Target:  5'- gGUCGACguccgcgccggGGCCGCCG-GGGCcggGCUucGGc -3'
miRNA:   3'- gCAGCUG-----------UCGGCGGCgCCCGa--CGA--CC- -5'
23573 3' -62.2 NC_005261.1 + 16374 0.87 0.031893
Target:  5'- -cUCGGCGGgaGCCGCGGGCUGCUGGc -3'
miRNA:   3'- gcAGCUGUCggCGGCGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 16602 0.68 0.51035
Target:  5'- cCGgCGGCGGCCGCCGaGcGGCgGgaGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGGCgC-CCGaCgaCC- -5'
23573 3' -62.2 NC_005261.1 + 16835 0.69 0.472776
Target:  5'- cCGUCGcacucgggcaggcGCcGCCGCCGCGGGgcgcCUGCa-- -3'
miRNA:   3'- -GCAGC-------------UGuCGGCGGCGCCC----GACGacc -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 17563 0.75 0.207895
Target:  5'- cCGuUCGGCGGUgGCCuuGCGGGCgaGCUGGc -3'
miRNA:   3'- -GC-AGCUGUCGgCGG--CGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 19028 0.68 0.528183
Target:  5'- gCGUCGcgggGCAGCCggagaGCCGCcaggcagggguacGGGCUGCgcGGc -3'
miRNA:   3'- -GCAGC----UGUCGG-----CGGCG-------------CCCGACGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 19811 0.66 0.645524
Target:  5'- cCG-CGGCGGCgacaGCCaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUGUCGg---CGG-CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20140 0.66 0.645524
Target:  5'- gCG-CGGCgGGCCGCCagcagacgaGCGcGGCUGC-GGc -3'
miRNA:   3'- -GCaGCUG-UCGGCGG---------CGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20180 0.67 0.548155
Target:  5'- uGcCG-CGGCCGCCagcGCGGGCgucgcgGCcGGg -3'
miRNA:   3'- gCaGCuGUCGGCGG---CGCCCGa-----CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20534 0.67 0.567392
Target:  5'- gCGcCGGCcucagggccGGCCucGCCGCGGGCccgGCcGGg -3'
miRNA:   3'- -GCaGCUG---------UCGG--CGGCGCCCGa--CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.