miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 51545 0.78 0.127808
Target:  5'- gCGUaCGugGGCCGCCucgcCGGGCUGgUGGg -3'
miRNA:   3'- -GCA-GCugUCGGCGGc---GCCCGACgACC- -5'
23573 3' -62.2 NC_005261.1 + 82854 0.8 0.099447
Target:  5'- gCGgCGGCAGCgGCgGCGGGCcagGCUGGg -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 80001 0.8 0.092167
Target:  5'- cCGagGACcccGCCGCCGCGGGCgcgcUGCUGGc -3'
miRNA:   3'- -GCagCUGu--CGGCGGCGCCCG----ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 99748 0.8 0.092167
Target:  5'- aGUCGAC-GCCGCCGCGGccguGCUGCUccaGGa -3'
miRNA:   3'- gCAGCUGuCGGCGGCGCC----CGACGA---CC- -5'
23573 3' -62.2 NC_005261.1 + 46747 0.8 0.089855
Target:  5'- gCGggCGGCGGCCGCgGCGGcGCcGCUGGg -3'
miRNA:   3'- -GCa-GCUGUCGGCGgCGCC-CGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 34270 0.75 0.202542
Target:  5'- cCGUgUGGCGGCCGCCGCGGucgcgccGCUGCa-- -3'
miRNA:   3'- -GCA-GCUGUCGGCGGCGCC-------CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 75229 0.75 0.203024
Target:  5'- gCGggCG-CGGCCGCCGaGGGCcgGCUGGa -3'
miRNA:   3'- -GCa-GCuGUCGGCGGCgCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 64172 0.73 0.280785
Target:  5'- gCGUCGcGCAGCUGCCGCagccccccGGCgcGCUGGu -3'
miRNA:   3'- -GCAGC-UGUCGGCGGCGc-------CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 70931 0.73 0.273902
Target:  5'- cCGaCGGCGGCgCGCgCGCGGcggcgggggggcuGCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCG-GCG-GCGCC-------------CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 28412 0.73 0.268372
Target:  5'- -uUCGGCGGCCGCCGCGGcggaaGCgGCgccGGc -3'
miRNA:   3'- gcAGCUGUCGGCGGCGCC-----CGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 31695 0.73 0.264735
Target:  5'- --aCG-CGGCCGCCGCcgaggaggcggugcuGGcGCUGCUGGa -3'
miRNA:   3'- gcaGCuGUCGGCGGCG---------------CC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 95536 0.73 0.250587
Target:  5'- --cCGGCAGCUggcgGCCGCGcGGCUGCcGGc -3'
miRNA:   3'- gcaGCUGUCGG----CGGCGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 85118 0.74 0.244878
Target:  5'- uGUUGGCGGCgcgcagCGCCGCGGcGCUGCg-- -3'
miRNA:   3'- gCAGCUGUCG------GCGGCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 82649 0.74 0.239278
Target:  5'- uGggCGAC-GCCGCCGCGGaCUGCgGGg -3'
miRNA:   3'- gCa-GCUGuCGGCGGCGCCcGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 70279 0.74 0.228399
Target:  5'- cCG-CGGCGGCCGCgcgaGCGGGCcgGCgGGg -3'
miRNA:   3'- -GCaGCUGUCGGCGg---CGCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 13483 0.74 0.228399
Target:  5'- ---aGGCGGCCGCUGC-GGCUGCgGGg -3'
miRNA:   3'- gcagCUGUCGGCGGCGcCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 53285 0.74 0.223118
Target:  5'- -cUCGGCGGCCGCCGaggaGGuGCUGCgcgaGGc -3'
miRNA:   3'- gcAGCUGUCGGCGGCg---CC-CGACGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 37140 0.74 0.217941
Target:  5'- gCG-CGGCcgcgcugcaGGCgGCCGCGGGCguggUGCUGGg -3'
miRNA:   3'- -GCaGCUG---------UCGgCGGCGCCCG----ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 44996 0.75 0.211365
Target:  5'- aGgCGACGGCgGCCGCuuuuuugccgcgcuGGcGCUGCUGGa -3'
miRNA:   3'- gCaGCUGUCGgCGGCG--------------CC-CGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 3201 0.75 0.207895
Target:  5'- gCGUCGGCcucGCCGCCGCGGccGCgUGCgGGc -3'
miRNA:   3'- -GCAGCUGu--CGGCGGCGCC--CG-ACGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.