miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 40035 0.66 0.654339
Target:  5'- aGUCGACcgcgaccAGCgUGgCGaCGGGCccgUGCUGGa -3'
miRNA:   3'- gCAGCUG-------UCG-GCgGC-GCCCG---ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 121476 0.66 0.61611
Target:  5'- -cUCGGCguaccGGCUGCCGCcacgGGGCgGCgGGg -3'
miRNA:   3'- gcAGCUG-----UCGGCGGCG----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 89416 0.67 0.590692
Target:  5'- -cUCGGCGcgugcGCgGCCGcCGGGCuccccgcgcccgccgUGCUGGa -3'
miRNA:   3'- gcAGCUGU-----CGgCGGC-GCCCG---------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 44307 0.67 0.600452
Target:  5'- ---gGGCcGCUGcCCGCGGGCgccgcagacgggggGCUGGg -3'
miRNA:   3'- gcagCUGuCGGC-GGCGCCCGa-------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 68707 0.66 0.61611
Target:  5'- aCGaCGGCGGCgccggcccucaCGCgGCGGGCgccgGCgGGa -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGgCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 17179 0.66 0.655318
Target:  5'- gCGUgGGCAGCCcuGCCGC-GGCgGCg-- -3'
miRNA:   3'- -GCAgCUGUCGG--CGGCGcCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 20855 0.66 0.655318
Target:  5'- gCGU-GGCGGCucuugCGCCGCGGGCcgGCc-- -3'
miRNA:   3'- -GCAgCUGUCG-----GCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 45663 0.66 0.63572
Target:  5'- gCGggCGugAucaacGCgCGCCcCGGGCUGCUGa -3'
miRNA:   3'- -GCa-GCugU-----CG-GCGGcGCCCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 86208 0.66 0.625913
Target:  5'- gCGUCGGCGcGCCGaaCCG-GGGCaGCcGGu -3'
miRNA:   3'- -GCAGCUGU-CGGC--GGCgCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 102277 0.66 0.625913
Target:  5'- gGUCGGCcugccgcgccAGCgGCCGCGGGUcGUa-- -3'
miRNA:   3'- gCAGCUG----------UCGgCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 30370 0.66 0.63572
Target:  5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3'
miRNA:   3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5'
23573 3' -62.2 NC_005261.1 + 123165 0.66 0.645524
Target:  5'- gCGg-GGCGGgCG-CGCGGGCguggugGCUGGu -3'
miRNA:   3'- -GCagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 52523 0.66 0.610234
Target:  5'- -cUUGACGGCCGCCcgaaacgcuucccggGCcGGCUGCUc- -3'
miRNA:   3'- gcAGCUGUCGGCGG---------------CGcCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 91481 0.66 0.613171
Target:  5'- aG-CGGC-GCCGCCGCGGccgccGCccgccccgcgcgccUGCUGGu -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCC-----CG--------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 89088 0.66 0.61611
Target:  5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3'
miRNA:   3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 31060 0.66 0.60534
Target:  5'- gCGgCGGgAGCCGCCGCuGcccgcccGCgUGCUGGg -3'
miRNA:   3'- -GCaGCUgUCGGCGGCGcC-------CG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 116916 1.1 0.000644
Target:  5'- aCGUCGACAGCCGCCGCGGGCUGCUGGa -3'
miRNA:   3'- -GCAGCUGUCGGCGGCGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 102233 0.67 0.586795
Target:  5'- -cUCGAUGGCCGCCGuCGcccGCUGCg-- -3'
miRNA:   3'- gcAGCUGUCGGCGGC-GCc--CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 2527 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.