Results 21 - 40 of 436 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 3' | -62.2 | NC_005261.1 | + | 8794 | 0.66 | 0.63572 |
Target: 5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3' miRNA: 3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 30370 | 0.66 | 0.63572 |
Target: 5'- cCGgcgCGcCGGgCGCCGCGGcGCgGgUGGa -3' miRNA: 3'- -GCa--GCuGUCgGCGGCGCC-CGaCgACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 102485 | 0.66 | 0.645524 |
Target: 5'- -cUCGGCGcGCCGCCGCgccagcgccuGGGCcuUGCgcaGGu -3' miRNA: 3'- gcAGCUGU-CGGCGGCG----------CCCG--ACGa--CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 4475 | 0.66 | 0.655318 |
Target: 5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3' miRNA: 3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 98738 | 0.66 | 0.61611 |
Target: 5'- --aCG-CGGCCG-CGCGGGC-GUUGGc -3' miRNA: 3'- gcaGCuGUCGGCgGCGCCCGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 3397 | 0.66 | 0.625913 |
Target: 5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3' miRNA: 3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 118066 | 0.66 | 0.63572 |
Target: 5'- cCG-CGGCAGCgGCCGCaGccgcgcucGuCUGCUGGc -3' miRNA: 3'- -GCaGCUGUCGgCGGCGcC--------C-GACGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 75476 | 0.66 | 0.655318 |
Target: 5'- cCGggCGGCGGCgcggGCCGCuacgagcgcgGGGC-GCUGGa -3' miRNA: 3'- -GCa-GCUGUCGg---CGGCG----------CCCGaCGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 66252 | 0.66 | 0.625913 |
Target: 5'- cCGUCGucacCAGCaCGCCGUccaccGGGCgcccgcgGCUGu -3' miRNA: 3'- -GCAGCu---GUCG-GCGGCG-----CCCGa------CGACc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 136461 | 0.66 | 0.655318 |
Target: 5'- aCG-CGGCAGCCccagacucGCgCGCGGGCaGCa-- -3' miRNA: 3'- -GCaGCUGUCGG--------CG-GCGCCCGaCGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 87405 | 0.66 | 0.63572 |
Target: 5'- -cUCGACGgcGCCGUCGaCGGGCgcGCcGGc -3' miRNA: 3'- gcAGCUGU--CGGCGGC-GCCCGa-CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 68282 | 0.66 | 0.63572 |
Target: 5'- gCG-CGGCggGGCCccgGCCGCGGGC-GC-GGa -3' miRNA: 3'- -GCaGCUG--UCGG---CGGCGCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 39324 | 0.66 | 0.645524 |
Target: 5'- gCGUCcaaccGC-GCCGCCGCGGccaaGCUGCgcgcGGc -3' miRNA: 3'- -GCAGc----UGuCGGCGGCGCC----CGACGa---CC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 110512 | 0.66 | 0.645524 |
Target: 5'- gCGUC-ACGGCCGUCGUcugcgGGGC-GCaGGa -3' miRNA: 3'- -GCAGcUGUCGGCGGCG-----CCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 135055 | 0.66 | 0.649443 |
Target: 5'- gCGgCGGCAGCgGCCcgccgcuuuccggcgGCGGGCUcGC-GGc -3' miRNA: 3'- -GCaGCUGUCGgCGG---------------CGCCCGA-CGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 20855 | 0.66 | 0.655318 |
Target: 5'- gCGU-GGCGGCucuugCGCCGCGGGCcgGCc-- -3' miRNA: 3'- -GCAgCUGUCG-----GCGGCGCCCGa-CGacc -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 123897 | 0.66 | 0.61611 |
Target: 5'- gCGgaaGGCcGCCGCUGUGGGgUGC-GGc -3' miRNA: 3'- -GCag-CUGuCGGCGGCGCCCgACGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 89088 | 0.66 | 0.61611 |
Target: 5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3' miRNA: 3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 68578 | 0.66 | 0.625913 |
Target: 5'- gCGUCG-CcGCCGagGCGGGCcGCgGGa -3' miRNA: 3'- -GCAGCuGuCGGCggCGCCCGaCGaCC- -5' |
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23573 | 3' | -62.2 | NC_005261.1 | + | 102277 | 0.66 | 0.625913 |
Target: 5'- gGUCGGCcugccgcgccAGCgGCCGCGGGUcGUa-- -3' miRNA: 3'- gCAGCUG----------UCGgCGGCGCCCGaCGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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