miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 123897 0.66 0.61611
Target:  5'- gCGgaaGGCcGCCGCUGUGGGgUGC-GGc -3'
miRNA:   3'- -GCag-CUGuCGGCGGCGCCCgACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 123884 0.67 0.55775
Target:  5'- cCG-CGGCuGCUGCCGCu-GCUGCUGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGccCGACGACc -5'
23573 3' -62.2 NC_005261.1 + 123696 0.68 0.501065
Target:  5'- gGUCGccggGCGGCCGCgccacCGcCGGGCUGUuaaauUGGu -3'
miRNA:   3'- gCAGC----UGUCGGCG-----GC-GCCCGACG-----ACC- -5'
23573 3' -62.2 NC_005261.1 + 123165 0.66 0.645524
Target:  5'- gCGg-GGCGGgCG-CGCGGGCguggugGCUGGu -3'
miRNA:   3'- -GCagCUGUCgGCgGCGCCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 122104 0.68 0.51035
Target:  5'- gGUCGGCAucGCgGCCGCGGugaucGCgUGCgUGGc -3'
miRNA:   3'- gCAGCUGU--CGgCGGCGCC-----CG-ACG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 122001 0.66 0.645524
Target:  5'- aCGUCGACcGCC-CCGaGGGCUGg--- -3'
miRNA:   3'- -GCAGCUGuCGGcGGCgCCCGACgacc -5'
23573 3' -62.2 NC_005261.1 + 121632 0.76 0.180131
Target:  5'- cCGcUCGGCGGCCGCCGCcGGCgagcgcggGCUGu -3'
miRNA:   3'- -GC-AGCUGUCGGCGGCGcCCGa-------CGACc -5'
23573 3' -62.2 NC_005261.1 + 121580 0.66 0.655318
Target:  5'- -cUCG-CuGCCaGCCG-GGGaCUGCUGGu -3'
miRNA:   3'- gcAGCuGuCGG-CGGCgCCC-GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 121476 0.66 0.61611
Target:  5'- -cUCGGCguaccGGCUGCCGCcacgGGGCgGCgGGg -3'
miRNA:   3'- gcAGCUG-----UCGGCGGCG----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 121410 0.73 0.256405
Target:  5'- aGUgCGACGGCUGCCGCcgccgcuacgGGGCgGCgGGg -3'
miRNA:   3'- gCA-GCUGUCGGCGGCG----------CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 121081 0.67 0.55775
Target:  5'- gCGcCGGCGGCCGCCaGCGccuccaGGCcgUGCgGGu -3'
miRNA:   3'- -GCaGCUGUCGGCGG-CGC------CCG--ACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 120598 0.75 0.203024
Target:  5'- cCGUCGccuGCGGCCucggcGCCGUGGGgcucCUGCUGGu -3'
miRNA:   3'- -GCAGC---UGUCGG-----CGGCGCCC----GACGACC- -5'
23573 3' -62.2 NC_005261.1 + 118911 0.67 0.553906
Target:  5'- gCGUCuGGgucCGG-CGCCGCGGGCgcggcgccgcgcgGCUGGc -3'
miRNA:   3'- -GCAG-CU---GUCgGCGGCGCCCGa------------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 118869 0.7 0.412909
Target:  5'- cCG-CGGCccuggccucGGCCaCCGCGGGCgcGCUGGu -3'
miRNA:   3'- -GCaGCUG---------UCGGcGGCGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 118615 0.74 0.217941
Target:  5'- uGUCGGCcguugcccuGGCCGCCGCGGcggcGCU-CUGGg -3'
miRNA:   3'- gCAGCUG---------UCGGCGGCGCC----CGAcGACC- -5'
23573 3' -62.2 NC_005261.1 + 118581 0.66 0.61611
Target:  5'- gCGgCGGCGcgcgccGCCGCCGCGGaGCUcGCg-- -3'
miRNA:   3'- -GCaGCUGU------CGGCGGCGCC-CGA-CGacc -5'
23573 3' -62.2 NC_005261.1 + 118383 0.68 0.519706
Target:  5'- gCG-CGGCccgaggcgcuGGCgGCCGCGGGCgccgcagccgcGCUGGc -3'
miRNA:   3'- -GCaGCUG----------UCGgCGGCGCCCGa----------CGACC- -5'
23573 3' -62.2 NC_005261.1 + 118285 0.77 0.137682
Target:  5'- uCGU-GACGGCCGCCGCGGGCaccgGGg -3'
miRNA:   3'- -GCAgCUGUCGGCGGCGCCCGacgaCC- -5'
23573 3' -62.2 NC_005261.1 + 118102 0.66 0.625913
Target:  5'- gCGcUCGcGgAGCCGCUGCGGGCccGCg-- -3'
miRNA:   3'- -GC-AGC-UgUCGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 118066 0.66 0.63572
Target:  5'- cCG-CGGCAGCgGCCGCaGccgcgcucGuCUGCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGGCGcC--------C-GACGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.