miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 117888 0.66 0.655318
Target:  5'- -cUCG-CGGCaGCCGCGGGCgucGCUc- -3'
miRNA:   3'- gcAGCuGUCGgCGGCGCCCGa--CGAcc -5'
23573 3' -62.2 NC_005261.1 + 117041 0.67 0.586795
Target:  5'- gCGUCcGCGGCCGCgcuCGCGccagcGGCUGCa-- -3'
miRNA:   3'- -GCAGcUGUCGGCG---GCGC-----CCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 116916 1.1 0.000644
Target:  5'- aCGUCGACAGCCGCCGCGGGCUGCUGGa -3'
miRNA:   3'- -GCAGCUGUCGGCGGCGCCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 116457 0.68 0.523467
Target:  5'- aCGUCGAguguguguguuuuGCCGgCGCGGGCgggGCgGGc -3'
miRNA:   3'- -GCAGCUgu-----------CGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 115909 0.66 0.625913
Target:  5'- cCGUCGucagcgcCGGCCGCCGCGuccGC-GCgcgGGg -3'
miRNA:   3'- -GCAGCu------GUCGGCGGCGCc--CGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 115482 0.67 0.545287
Target:  5'- aCG-CGugGGCCGCCGCcGccccgcgcccgacuGGC-GCUGGu -3'
miRNA:   3'- -GCaGCugUCGGCGGCG-C--------------CCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 115386 0.66 0.61513
Target:  5'- gCGUCGugGucuucagcgggucGUCGaCCGCGGGCggcaGCcGGg -3'
miRNA:   3'- -GCAGCugU-------------CGGC-GGCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 115025 0.69 0.44706
Target:  5'- gCG-CGGCcGCCGCUGCGGGCcccGC-GGc -3'
miRNA:   3'- -GCaGCUGuCGGCGGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 113576 0.68 0.482725
Target:  5'- gGUCGGUGGCCGCCGCgcuGGGCgaccucGCgcccGGg -3'
miRNA:   3'- gCAGCUGUCGGCGGCG---CCCGa-----CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 113311 0.66 0.63572
Target:  5'- uCGgCGgcuGCAGCCGCCGaGGGCUuGaaGGg -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCgCCCGA-CgaCC- -5'
23573 3' -62.2 NC_005261.1 + 113285 0.68 0.519706
Target:  5'- aCGagGGCGugguccucucGCUGCCGCGGGC--CUGGg -3'
miRNA:   3'- -GCagCUGU----------CGGCGGCGCCCGacGACC- -5'
23573 3' -62.2 NC_005261.1 + 113113 0.67 0.585822
Target:  5'- -cUCGGCAuggacaugcucucGcCCGCCGCGcGGCgGCUGa -3'
miRNA:   3'- gcAGCUGU-------------C-GGCGGCGC-CCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 112172 0.75 0.193578
Target:  5'- -uUCGcCGGCCGCgCGCgGGGCUcGCUGGc -3'
miRNA:   3'- gcAGCuGUCGGCG-GCG-CCCGA-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 110512 0.66 0.645524
Target:  5'- gCGUC-ACGGCCGUCGUcugcgGGGC-GCaGGa -3'
miRNA:   3'- -GCAGcUGUCGGCGGCG-----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 110317 0.7 0.404626
Target:  5'- aGUaCGGCAaccgcGCCGCCGCGGacgcGCUGCg-- -3'
miRNA:   3'- gCA-GCUGU-----CGGCGGCGCC----CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 110239 0.69 0.429785
Target:  5'- gCGUgGGCGGCgCGgCGCccgggGGGCUGCgGGc -3'
miRNA:   3'- -GCAgCUGUCG-GCgGCG-----CCCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 110028 0.66 0.606319
Target:  5'- cCG-CGGCAGCgGCgGCGaGGCcGCcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGC-CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 109825 0.67 0.55775
Target:  5'- cCG-CGGCGGCCGCCGaaucuGGCgugccGUUGGu -3'
miRNA:   3'- -GCaGCUGUCGGCGGCgc---CCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 108992 0.66 0.655318
Target:  5'- cCGUCGcGCGG-CGCCGCGGcGUagccUGCgcgGGc -3'
miRNA:   3'- -GCAGC-UGUCgGCGGCGCC-CG----ACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 108332 0.71 0.342275
Target:  5'- cCGcUCG-CGcGCUGCCGCGGGCccgggcGCUGGc -3'
miRNA:   3'- -GC-AGCuGU-CGGCGGCGCCCGa-----CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.