miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 20642 0.67 0.55775
Target:  5'- uCGUCGGCAGgaucgacaGCgGCGGGC-GCgGGg -3'
miRNA:   3'- -GCAGCUGUCgg------CGgCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 20695 0.66 0.644544
Target:  5'- gGUUGACGGCUacaaccuGCUGaacuCGGGCcgcGCUGGg -3'
miRNA:   3'- gCAGCUGUCGG-------CGGC----GCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 20855 0.66 0.655318
Target:  5'- gCGU-GGCGGCucuugCGCCGCGGGCcgGCc-- -3'
miRNA:   3'- -GCAgCUGUCG-----GCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 22062 0.67 0.548155
Target:  5'- gCGUCGgggacGCGGCCGCgacCGCGcGCUGCUu- -3'
miRNA:   3'- -GCAGC-----UGUCGGCG---GCGCcCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 22221 0.72 0.300254
Target:  5'- cCGUCGGCggcucaGGCCGCCuCGGGCgGCUc- -3'
miRNA:   3'- -GCAGCUG------UCGGCGGcGCCCGaCGAcc -5'
23573 3' -62.2 NC_005261.1 + 22801 0.68 0.491855
Target:  5'- uGUCG-CGGCCgGCgGCGGcGCUGCc-- -3'
miRNA:   3'- gCAGCuGUCGG-CGgCGCC-CGACGacc -5'
23573 3' -62.2 NC_005261.1 + 23113 0.66 0.655318
Target:  5'- -aUCGugGG-CGCCGUGGGCaGCg-- -3'
miRNA:   3'- gcAGCugUCgGCGGCGCCCGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 23546 0.67 0.586795
Target:  5'- aGgCGGCaggAGCCGUCGCaggugGGGCaggGCUGGc -3'
miRNA:   3'- gCaGCUG---UCGGCGGCG-----CCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 23611 0.69 0.468289
Target:  5'- uGUCGccGCcGCUGCCGgggcgcggcggggguCGGGCgGCUGGa -3'
miRNA:   3'- gCAGC--UGuCGGCGGC---------------GCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 24304 0.68 0.529129
Target:  5'- aCGUgCGAgGGUCGCCGCGcccGCUGCcucGGc -3'
miRNA:   3'- -GCA-GCUgUCGGCGGCGCc--CGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 24924 0.73 0.256405
Target:  5'- uCGgCGgcuGCAGCCGCCGagGGGCagGCUGGc -3'
miRNA:   3'- -GCaGC---UGUCGGCGGCg-CCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 25097 0.68 0.482725
Target:  5'- aCGUU--CAGCCGCCGCGcGGCggGCg-- -3'
miRNA:   3'- -GCAGcuGUCGGCGGCGC-CCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 25265 0.66 0.645524
Target:  5'- gCGgUGGCGGCCGCCGUGGacaGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGGCGCC---CGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 26557 0.7 0.396449
Target:  5'- uCGcCGACGuacGCCGCCaccgcggcGCGGGaggGCUGGg -3'
miRNA:   3'- -GCaGCUGU---CGGCGG--------CGCCCga-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 28412 0.73 0.268372
Target:  5'- -uUCGGCGGCCGCCGCGGcggaaGCgGCgccGGc -3'
miRNA:   3'- gcAGCUGUCGGCGGCGCC-----CGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 28665 0.67 0.577076
Target:  5'- gCGUCGGCAGCgGCgagGgGGGCcGCggcGGu -3'
miRNA:   3'- -GCAGCUGUCGgCGg--CgCCCGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 28854 0.71 0.334986
Target:  5'- cCGUCG-UGGCCGCCGCccuugaGGCUGCggcgcGGa -3'
miRNA:   3'- -GCAGCuGUCGGCGGCGc-----CCGACGa----CC- -5'
23573 3' -62.2 NC_005261.1 + 29253 0.69 0.437511
Target:  5'- gCG-CGACgGGCCGCCGCcgcuggaGGGCccgcUGCUGa -3'
miRNA:   3'- -GCaGCUG-UCGGCGGCG-------CCCG----ACGACc -5'
23573 3' -62.2 NC_005261.1 + 29291 0.66 0.625913
Target:  5'- gCGagGACGcGgCGUgCGUGGGCgUGCUGGg -3'
miRNA:   3'- -GCagCUGU-CgGCG-GCGCCCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 29474 0.68 0.537662
Target:  5'- cCGUgGcGCGGCgCGCCGCGGacgccgcggcgccGCcGCUGGc -3'
miRNA:   3'- -GCAgC-UGUCG-GCGGCGCC-------------CGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.