miRNA display CGI


Results 61 - 80 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 115909 0.66 0.625913
Target:  5'- cCGUCGucagcgcCGGCCGCCGCGuccGC-GCgcgGGg -3'
miRNA:   3'- -GCAGCu------GUCGGCGGCGCc--CGaCGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 68578 0.66 0.625913
Target:  5'- gCGUCG-CcGCCGagGCGGGCcGCgGGa -3'
miRNA:   3'- -GCAGCuGuCGGCggCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 62375 0.66 0.625913
Target:  5'- cCGUCGG-GGCCGCCGuCGGcGCcGCg-- -3'
miRNA:   3'- -GCAGCUgUCGGCGGC-GCC-CGaCGacc -5'
23573 3' -62.2 NC_005261.1 + 75850 0.66 0.625913
Target:  5'- --aCGACGgugccGCUGCCGCaGGCgcgcgaGCUGGu -3'
miRNA:   3'- gcaGCUGU-----CGGCGGCGcCCGa-----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 106876 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 67588 0.66 0.625913
Target:  5'- gCGcCGAaccuCAG-CGCCGCGGcGCuuggcaUGCUGGg -3'
miRNA:   3'- -GCaGCU----GUCgGCGGCGCC-CG------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 67527 0.66 0.625913
Target:  5'- -cUCGGCcguGCC-CgCGCGGGCcgcGCUGGa -3'
miRNA:   3'- gcAGCUGu--CGGcG-GCGCCCGa--CGACC- -5'
23573 3' -62.2 NC_005261.1 + 51938 0.66 0.625913
Target:  5'- aGggCGACGuGCC-CUGCGGGCUGUg-- -3'
miRNA:   3'- gCa-GCUGU-CGGcGGCGCCCGACGacc -5'
23573 3' -62.2 NC_005261.1 + 11731 0.66 0.625913
Target:  5'- ---aGGCAGaCCGCCuGCGGcaGCUGgUGGc -3'
miRNA:   3'- gcagCUGUC-GGCGG-CGCC--CGACgACC- -5'
23573 3' -62.2 NC_005261.1 + 29291 0.66 0.625913
Target:  5'- gCGagGACGcGgCGUgCGUGGGCgUGCUGGg -3'
miRNA:   3'- -GCagCUGU-CgGCG-GCGCCCG-ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 118102 0.66 0.625913
Target:  5'- gCGcUCGcGgAGCCGCUGCGGGCccGCg-- -3'
miRNA:   3'- -GC-AGC-UgUCGGCGGCGCCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 93918 0.66 0.625913
Target:  5'- cCGUCuGCGGCgC-CCGCGGGCaGC-GGc -3'
miRNA:   3'- -GCAGcUGUCG-GcGGCGCCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 2359 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 107914 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 95945 0.66 0.625913
Target:  5'- uGggCGACAuCuCGCgGC-GGCUGCUGGg -3'
miRNA:   3'- gCa-GCUGUcG-GCGgCGcCCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 66039 0.66 0.624932
Target:  5'- aGUCGGCGGCCacggccaGCCcCGGGCccGC-GGu -3'
miRNA:   3'- gCAGCUGUCGG-------CGGcGCCCGa-CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 91201 0.66 0.61611
Target:  5'- ---gGACAgcgccGCCGUCGCGGG--GCUGGa -3'
miRNA:   3'- gcagCUGU-----CGGCGGCGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 101235 0.66 0.61611
Target:  5'- cCG-CG-CAGC--CCGCGGGCUccgGCUGGa -3'
miRNA:   3'- -GCaGCuGUCGgcGGCGCCCGA---CGACC- -5'
23573 3' -62.2 NC_005261.1 + 92959 0.66 0.61611
Target:  5'- gGUaCGGCAGCacgGCgGCGGGCacggUGgUGGc -3'
miRNA:   3'- gCA-GCUGUCGg--CGgCGCCCG----ACgACC- -5'
23573 3' -62.2 NC_005261.1 + 84489 0.66 0.61611
Target:  5'- aCGUcCGGCAcguGCuCGCCcguGCGGGCgcgccgcaGCUGGc -3'
miRNA:   3'- -GCA-GCUGU---CG-GCGG---CGCCCGa-------CGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.