miRNA display CGI


Results 81 - 100 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 92959 0.66 0.61611
Target:  5'- gGUaCGGCAGCacgGCgGCGGGCacggUGgUGGc -3'
miRNA:   3'- gCA-GCUGUCGg--CGgCGCCCG----ACgACC- -5'
23573 3' -62.2 NC_005261.1 + 68707 0.66 0.61611
Target:  5'- aCGaCGGCGGCgccggcccucaCGCgGCGGGCgccgGCgGGa -3'
miRNA:   3'- -GCaGCUGUCG-----------GCGgCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 89088 0.66 0.61611
Target:  5'- --cCGGCuGCgGCC-CGGGCgcGCUGGc -3'
miRNA:   3'- gcaGCUGuCGgCGGcGCCCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 98738 0.66 0.61611
Target:  5'- --aCG-CGGCCG-CGCGGGC-GUUGGc -3'
miRNA:   3'- gcaGCuGUCGGCgGCGCCCGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 69351 0.66 0.61611
Target:  5'- aCGgCGACGacGCgGCCGCGcGCgcGCUGGa -3'
miRNA:   3'- -GCaGCUGU--CGgCGGCGCcCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 123897 0.66 0.61611
Target:  5'- gCGgaaGGCcGCCGCUGUGGGgUGC-GGc -3'
miRNA:   3'- -GCag-CUGuCGGCGGCGCCCgACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 118581 0.66 0.61611
Target:  5'- gCGgCGGCGcgcgccGCCGCCGCGGaGCUcGCg-- -3'
miRNA:   3'- -GCaGCUGU------CGGCGGCGCC-CGA-CGacc -5'
23573 3' -62.2 NC_005261.1 + 121476 0.66 0.61611
Target:  5'- -cUCGGCguaccGGCUGCCGCcacgGGGCgGCgGGg -3'
miRNA:   3'- gcAGCUG-----UCGGCGGCG----CCCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 115386 0.66 0.61513
Target:  5'- gCGUCGugGucuucagcgggucGUCGaCCGCGGGCggcaGCcGGg -3'
miRNA:   3'- -GCAGCugU-------------CGGC-GGCGCCCGa---CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 34100 0.66 0.61513
Target:  5'- --cUGGCGGCCGagcucgcggcgaaCCGCGcGGCUGC-GGu -3'
miRNA:   3'- gcaGCUGUCGGC-------------GGCGC-CCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 46254 0.66 0.61513
Target:  5'- cCG-CGGCGGCgGCCGCgaccguguccccgGGGCgcuCUGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGGCG-------------CCCGac-GACC- -5'
23573 3' -62.2 NC_005261.1 + 55712 0.66 0.613171
Target:  5'- -uUgGGCGGCCacgcgugucucuauGUCGCGGGCgUGCUGc -3'
miRNA:   3'- gcAgCUGUCGG--------------CGGCGCCCG-ACGACc -5'
23573 3' -62.2 NC_005261.1 + 91481 0.66 0.613171
Target:  5'- aG-CGGC-GCCGCCGCGGccgccGCccgccccgcgcgccUGCUGGu -3'
miRNA:   3'- gCaGCUGuCGGCGGCGCC-----CG--------------ACGACC- -5'
23573 3' -62.2 NC_005261.1 + 136416 0.66 0.610234
Target:  5'- uGUCGG-AGCCGCagucgcaggcccccuCGCGGGCgucGCaGGg -3'
miRNA:   3'- gCAGCUgUCGGCG---------------GCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 52523 0.66 0.610234
Target:  5'- -cUUGACGGCCGCCcgaaacgcuucccggGCcGGCUGCUc- -3'
miRNA:   3'- gcAGCUGUCGGCGG---------------CGcCCGACGAcc -5'
23573 3' -62.2 NC_005261.1 + 4962 0.66 0.610234
Target:  5'- gCGcCGGCGcccugguacucgcgcGCCGCUGCGGGUagUGCUc- -3'
miRNA:   3'- -GCaGCUGU---------------CGGCGGCGCCCG--ACGAcc -5'
23573 3' -62.2 NC_005261.1 + 110028 0.66 0.606319
Target:  5'- cCG-CGGCAGCgGCgGCGaGGCcGCcGGc -3'
miRNA:   3'- -GCaGCUGUCGgCGgCGC-CCGaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 29814 0.66 0.606319
Target:  5'- gGUUGccgugcacGCAGgCGCggugGCGcGGCUGCUGGa -3'
miRNA:   3'- gCAGC--------UGUCgGCGg---CGC-CCGACGACC- -5'
23573 3' -62.2 NC_005261.1 + 15401 0.66 0.606319
Target:  5'- aGUaUGACcgcGCCGCagCGCGGG-UGCUGGc -3'
miRNA:   3'- gCA-GCUGu--CGGCG--GCGCCCgACGACC- -5'
23573 3' -62.2 NC_005261.1 + 107044 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.