miRNA display CGI


Results 81 - 100 of 436 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 3' -62.2 NC_005261.1 + 108312 0.7 0.412909
Target:  5'- gCGUCccaGACGGCCGCCGCGuGCUccGCg-- -3'
miRNA:   3'- -GCAG---CUGUCGGCGGCGCcCGA--CGacc -5'
23573 3' -62.2 NC_005261.1 + 108046 0.7 0.42468
Target:  5'- gCG-CGGCGGCCGCCucggcgcgcagcgcgGCGGGCgcgGCg-- -3'
miRNA:   3'- -GCaGCUGUCGGCGG---------------CGCCCGa--CGacc -5'
23573 3' -62.2 NC_005261.1 + 107914 0.66 0.625913
Target:  5'- gCGcCGGCAcuuCCGCCgGCGGGCUGaaGa -3'
miRNA:   3'- -GCaGCUGUc--GGCGG-CGCCCGACgaCc -5'
23573 3' -62.2 NC_005261.1 + 107714 0.68 0.482725
Target:  5'- aCGUCG-CuGCCGCgGCaGGCgGCUGc -3'
miRNA:   3'- -GCAGCuGuCGGCGgCGcCCGaCGACc -5'
23573 3' -62.2 NC_005261.1 + 107125 0.77 0.159557
Target:  5'- cCGUCGGCGGCgggGCCGcCGGGCgGCaUGGg -3'
miRNA:   3'- -GCAGCUGUCGg--CGGC-GCCCGaCG-ACC- -5'
23573 3' -62.2 NC_005261.1 + 107044 0.66 0.606319
Target:  5'- uCGgggCGGCAGUaggccgccagCGCCGCGG-C-GCUGGg -3'
miRNA:   3'- -GCa--GCUGUCG----------GCGGCGCCcGaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 106904 0.68 0.482725
Target:  5'- gCGUCGucCGcGCCGCgGCGcGCUGCaGGg -3'
miRNA:   3'- -GCAGCu-GU-CGGCGgCGCcCGACGaCC- -5'
23573 3' -62.2 NC_005261.1 + 106876 0.66 0.625913
Target:  5'- uG-CGACAuccaggccacgcGCCGCCGCaGcGGCgcGCUGGc -3'
miRNA:   3'- gCaGCUGU------------CGGCGGCG-C-CCGa-CGACC- -5'
23573 3' -62.2 NC_005261.1 + 106843 0.68 0.538613
Target:  5'- gCGUCGucCAGcCCGCCGCcuGGGggGCgGGc -3'
miRNA:   3'- -GCAGCu-GUC-GGCGGCG--CCCgaCGaCC- -5'
23573 3' -62.2 NC_005261.1 + 106572 0.69 0.429785
Target:  5'- gCGcCGGCcccggGGCCGCCGCGcGGCgcuccucCUGGa -3'
miRNA:   3'- -GCaGCUG-----UCGGCGGCGC-CCGac-----GACC- -5'
23573 3' -62.2 NC_005261.1 + 106543 0.66 0.606319
Target:  5'- -cUCGGCGGCgGCCGCguccGGGCcgGCg-- -3'
miRNA:   3'- gcAGCUGUCGgCGGCG----CCCGa-CGacc -5'
23573 3' -62.2 NC_005261.1 + 105565 0.68 0.51035
Target:  5'- gCGggCGGCGGCguuagCGgCGCGGGggGCUGGc -3'
miRNA:   3'- -GCa-GCUGUCG-----GCgGCGCCCgaCGACC- -5'
23573 3' -62.2 NC_005261.1 + 104883 0.7 0.388378
Target:  5'- gCGUCGAUcGCCGCCGCGuGC-GCccGGa -3'
miRNA:   3'- -GCAGCUGuCGGCGGCGCcCGaCGa-CC- -5'
23573 3' -62.2 NC_005261.1 + 104810 0.7 0.396449
Target:  5'- gCGgCGGCGGCUGCgGCGgcGGCUGCggcGGc -3'
miRNA:   3'- -GCaGCUGUCGGCGgCGC--CCGACGa--CC- -5'
23573 3' -62.2 NC_005261.1 + 104769 0.71 0.342275
Target:  5'- cCGgcugCGGCGGCgGCUGCGGGgCgGCUGcGg -3'
miRNA:   3'- -GCa---GCUGUCGgCGGCGCCC-GaCGAC-C- -5'
23573 3' -62.2 NC_005261.1 + 104277 0.67 0.567392
Target:  5'- -cUCGGCGGCUG-CGCGGGCcucGCaGGc -3'
miRNA:   3'- gcAGCUGUCGGCgGCGCCCGa--CGaCC- -5'
23573 3' -62.2 NC_005261.1 + 104153 0.71 0.357195
Target:  5'- gGUCGGCcaccgcGCCGuCCGCGGGCgccGCgcgcGGg -3'
miRNA:   3'- gCAGCUGu-----CGGC-GGCGCCCGa--CGa---CC- -5'
23573 3' -62.2 NC_005261.1 + 103486 0.67 0.574166
Target:  5'- uGUCGagaaacaccaccccGCGGCCGCCaGgGGGCgccgaccGCUGa -3'
miRNA:   3'- gCAGC--------------UGUCGGCGG-CgCCCGa------CGACc -5'
23573 3' -62.2 NC_005261.1 + 103451 0.7 0.388378
Target:  5'- uCG-CGGuCGGCCGCCGCgcccgucgccaGGGCguccaGCUGGc -3'
miRNA:   3'- -GCaGCU-GUCGGCGGCG-----------CCCGa----CGACC- -5'
23573 3' -62.2 NC_005261.1 + 103183 0.68 0.519706
Target:  5'- cCGcCGcGCGGCCGCCGUuaGGGCgGCg-- -3'
miRNA:   3'- -GCaGC-UGUCGGCGGCG--CCCGaCGacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.