miRNA display CGI


Results 81 - 100 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 102732 0.7 0.796524
Target:  5'- uGCCAGCGGGGCaaGGgcGGgugccgcgGCAGGg -3'
miRNA:   3'- gCGGUUGUUCUGcgCCuuCCa-------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137432 0.7 0.804742
Target:  5'- gCGCgCGugGGGggcggcgGCGCGGggGGgggGCGGGg -3'
miRNA:   3'- -GCG-GUugUUC-------UGCGCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 15953 0.7 0.805647
Target:  5'- aGCCGgggGCGAGugGCGGgcGGgGgAGGg -3'
miRNA:   3'- gCGGU---UGUUCugCGCCuuCCaCgUCU- -5'
23573 5' -54.1 NC_005261.1 + 104580 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 44958 0.7 0.805647
Target:  5'- aGCCugcuGCGGGACGCGcgcGAGGGcccggGCGGGc -3'
miRNA:   3'- gCGGu---UGUUCUGCGC---CUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 62 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137745 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 65180 0.69 0.814607
Target:  5'- gCGCCuuccuAGGCGCGGggGGcGCGu- -3'
miRNA:   3'- -GCGGuugu-UCUGCGCCuuCCaCGUcu -5'
23573 5' -54.1 NC_005261.1 + 128250 0.69 0.814607
Target:  5'- gGCCGcgcCGAGGCGCguccGGGAGGgGCGGGc -3'
miRNA:   3'- gCGGUu--GUUCUGCG----CCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 65495 0.69 0.814607
Target:  5'- cCGCCAuGCGGGccgcccGCGCGGAcGGGgcgGCGGGc -3'
miRNA:   3'- -GCGGU-UGUUC------UGCGCCU-UCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 38261 0.69 0.814607
Target:  5'- aCGCCAGCcugggcuGGGgGCGGcuGGUGCAc- -3'
miRNA:   3'- -GCGGUUGu------UCUgCGCCuuCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 23733 0.69 0.814607
Target:  5'- gGCCGcgcCGAGGCGCguccGGGAGGgGCGGGc -3'
miRNA:   3'- gCGGUu--GUUCUGCG----CCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 89775 0.69 0.814607
Target:  5'- gGCCGAgGAGGCccugcgggaGCGGAAGGUGgAc- -3'
miRNA:   3'- gCGGUUgUUCUG---------CGCCUUCCACgUcu -5'
23573 5' -54.1 NC_005261.1 + 126608 0.69 0.823394
Target:  5'- gCGCCGcguGGGgGCGGGAGGgcggugUGCGGAg -3'
miRNA:   3'- -GCGGUuguUCUgCGCCUUCC------ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 993 0.69 0.823394
Target:  5'- aGCgGAgGAGACGgGGgcGGgggGCGGGg -3'
miRNA:   3'- gCGgUUgUUCUGCgCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 22090 0.69 0.823394
Target:  5'- gCGCCGcguGGGgGCGGGAGGgcggugUGCGGAg -3'
miRNA:   3'- -GCGGUuguUCUgCGCCUUCC------ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 32351 0.69 0.823394
Target:  5'- aCGCgGAcCAGGGCccGCGGGAgacgcuGGUGCAGGc -3'
miRNA:   3'- -GCGgUU-GUUCUG--CGCCUU------CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136868 0.69 0.823394
Target:  5'- aCGCgGAcCAGGGCccGCGGGAgacgcuGGUGCAGGc -3'
miRNA:   3'- -GCGgUU-GUUCUG--CGCCUU------CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 100493 0.69 0.823394
Target:  5'- gCGCCcGCGggGGGCGaCGGggGGcuccgGCGGGc -3'
miRNA:   3'- -GCGGuUGU--UCUGC-GCCuuCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 74029 0.69 0.823394
Target:  5'- aCGcCCAGCAAGAUGgaccagcgcgcCGGggGGcUGCGGc -3'
miRNA:   3'- -GC-GGUUGUUCUGC-----------GCCuuCC-ACGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.