Results 61 - 80 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 5' | -54.1 | NC_005261.1 | + | 58289 | 0.71 | 0.737869 |
Target: 5'- gGCCGGCGcgccgggGGGCGCGGgGAGGggGCGGc -3' miRNA: 3'- gCGGUUGU-------UCUGCGCC-UUCCa-CGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 60850 | 0.71 | 0.742841 |
Target: 5'- gGCCGGCAGGgggugcgccggagacGCGCGGccuGGUGCAc- -3' miRNA: 3'- gCGGUUGUUC---------------UGCGCCuu-CCACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 84800 | 0.71 | 0.747788 |
Target: 5'- aCGcCCGACGggcuggcGGACgGCGGggGGccGCAGAc -3' miRNA: 3'- -GC-GGUUGU-------UCUG-CGCCuuCCa-CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 49458 | 0.7 | 0.755648 |
Target: 5'- gCGCCGcggaaggcgggcgcGCAGGccGCGCGGAAGcUGCAGc -3' miRNA: 3'- -GCGGU--------------UGUUC--UGCGCCUUCcACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 26944 | 0.7 | 0.758577 |
Target: 5'- aGCgCGGCGgaAGGCGCGGGccGGGUGCu-- -3' miRNA: 3'- gCG-GUUGU--UCUGCGCCU--UCCACGucu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 65155 | 0.7 | 0.758577 |
Target: 5'- gCGCCAGC---GCGCaGAAGGUGCGc- -3' miRNA: 3'- -GCGGUUGuucUGCGcCUUCCACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 74684 | 0.7 | 0.758577 |
Target: 5'- gCGCCAGCGGGcacggcGCGCGGGcAGGccGCGGu -3' miRNA: 3'- -GCGGUUGUUC------UGCGCCU-UCCa-CGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 20642 | 0.7 | 0.768263 |
Target: 5'- uCGUCGGCAGGAUcgacagcgGCGGGcgcGGGgcgGCAGAa -3' miRNA: 3'- -GCGGUUGUUCUG--------CGCCU---UCCa--CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 101344 | 0.7 | 0.768263 |
Target: 5'- gCGCCuugGCGaggaaGGGCGCGGGccAGcGUGCGGGg -3' miRNA: 3'- -GCGGu--UGU-----UCUGCGCCU--UC-CACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 127650 | 0.7 | 0.768263 |
Target: 5'- gCGCCGGgGGGcGCGCGGGuucGGG-GCGGGa -3' miRNA: 3'- -GCGGUUgUUC-UGCGCCU---UCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 39878 | 0.7 | 0.768263 |
Target: 5'- gGCCAGCAGGccgcgcGCGCGGcu-GUGCAGc -3' miRNA: 3'- gCGGUUGUUC------UGCGCCuucCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 14939 | 0.7 | 0.768263 |
Target: 5'- aCGCCAGCu-GGCGCuGGAAGcGaGCGGGc -3' miRNA: 3'- -GCGGUUGuuCUGCG-CCUUC-CaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 62891 | 0.7 | 0.768263 |
Target: 5'- aGCCcgcGCGAGGCGgGGcGGG-GCGGAc -3' miRNA: 3'- gCGGu--UGUUCUGCgCCuUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 71608 | 0.7 | 0.777822 |
Target: 5'- cCGCCGccGCGgcccGGGCGCGGGcccGGGcgGCGGGa -3' miRNA: 3'- -GCGGU--UGU----UCUGCGCCU---UCCa-CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 55718 | 0.7 | 0.777822 |
Target: 5'- gGCCGACucGGGCGaagaGGggGGUGgAGc -3' miRNA: 3'- gCGGUUGu-UCUGCg---CCuuCCACgUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 69571 | 0.7 | 0.787246 |
Target: 5'- aCGCCGGC--GGCGCGGgcGGcGguGAc -3' miRNA: 3'- -GCGGUUGuuCUGCGCCuuCCaCguCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 102732 | 0.7 | 0.796524 |
Target: 5'- uGCCAGCGGGGCaaGGgcGGgugccgcgGCAGGg -3' miRNA: 3'- gCGGUUGUUCUGcgCCuuCCa-------CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 22736 | 0.7 | 0.796524 |
Target: 5'- gCGCCAGucGGGCGCGGGGcGGcgGCGGc -3' miRNA: 3'- -GCGGUUguUCUGCGCCUU-CCa-CGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 113732 | 0.7 | 0.796524 |
Target: 5'- aGCCAAU-GGACG-GGAAGGUGCc-- -3' miRNA: 3'- gCGGUUGuUCUGCgCCUUCCACGucu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 127253 | 0.7 | 0.796524 |
Target: 5'- gCGCCAGucGGGCGCGGGGcGGcgGCGGc -3' miRNA: 3'- -GCGGUUguUCUGCGCCUU-CCa-CGUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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