miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 30375 0.68 0.893421
Target:  5'- gCGCCgGGCGccgcGGCGCGGGuggAGGUGgAGGa -3'
miRNA:   3'- -GCGG-UUGUu---CUGCGCCU---UCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 30472 0.66 0.932829
Target:  5'- gCGCCAGCGagcgcugGGGCGUGGccccccccgcggccGAGGcGCAGc -3'
miRNA:   3'- -GCGGUUGU-------UCUGCGCC--------------UUCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 30756 0.67 0.912666
Target:  5'- cCGCUGAUcgcguGGGCGCGGGAcugcGGUGcCGGGg -3'
miRNA:   3'- -GCGGUUGu----UCUGCGCCUU----CCAC-GUCU- -5'
23573 5' -54.1 NC_005261.1 + 31116 0.66 0.948918
Target:  5'- uCGCCGGCGcgguGGCGCGGcuGGggGCGc- -3'
miRNA:   3'- -GCGGUUGUu---CUGCGCCuuCCa-CGUcu -5'
23573 5' -54.1 NC_005261.1 + 31473 0.75 0.512655
Target:  5'- cCGCCGGCAAGcuCGUGGcGGGcGCGGAg -3'
miRNA:   3'- -GCGGUUGUUCu-GCGCCuUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 31683 0.69 0.840415
Target:  5'- gCGCCGGCccGGACGCGGccgccgccGAGGagGCGGu -3'
miRNA:   3'- -GCGGUUGu-UCUGCGCC--------UUCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 32351 0.69 0.823394
Target:  5'- aCGCgGAcCAGGGCccGCGGGAgacgcuGGUGCAGGc -3'
miRNA:   3'- -GCGgUU-GUUCUG--CGCCUU------CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 32381 0.67 0.91859
Target:  5'- uCGCCGACcgggcGGACGCGGAca--GCGGGc -3'
miRNA:   3'- -GCGGUUGu----UCUGCGCCUuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 32926 0.66 0.94448
Target:  5'- gGgCGGC-GGGCGgGGggGGgGCGGGg -3'
miRNA:   3'- gCgGUUGuUCUGCgCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 33127 0.74 0.562255
Target:  5'- gCGCgGGCAAGccccCGCGGAAGGUccggggcGCGGAg -3'
miRNA:   3'- -GCGgUUGUUCu---GCGCCUUCCA-------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 33176 0.67 0.900079
Target:  5'- uGCCGGgGAGGgcUGgGGAGGG-GCGGGg -3'
miRNA:   3'- gCGGUUgUUCU--GCgCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 33787 0.66 0.939799
Target:  5'- cCGCCGGCGGcggcGACGCGGGcccgcucaAGcuGUGCGGc -3'
miRNA:   3'- -GCGGUUGUU----CUGCGCCU--------UC--CACGUCu -5'
23573 5' -54.1 NC_005261.1 + 34654 0.68 0.856648
Target:  5'- gGCgAGCGAcGGCGCGGgcGGcgGCGGc -3'
miRNA:   3'- gCGgUUGUU-CUGCGCCuuCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 34702 0.68 0.893421
Target:  5'- gGCCGAgGAGGCgGCGGAuGccGCGGAc -3'
miRNA:   3'- gCGGUUgUUCUG-CGCCUuCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35212 0.66 0.94448
Target:  5'- uGCCGG-GAGugGCGGcugGAGGggacccgGCAGGa -3'
miRNA:   3'- gCGGUUgUUCugCGCC---UUCCa------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35391 0.71 0.728859
Target:  5'- gGcCCAGCAcguGGCGCGGcgcGAGGcGCAGAc -3'
miRNA:   3'- gC-GGUUGUu--CUGCGCC---UUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35507 0.67 0.906495
Target:  5'- aCGCCcuGGCGgcGGGCGCGGAcgcgGCGGAg -3'
miRNA:   3'- -GCGG--UUGU--UCUGCGCCUuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35624 0.81 0.245367
Target:  5'- cCGCUGGCGgcgaGGACGCGGAAGGcGCGGGc -3'
miRNA:   3'- -GCGGUUGU----UCUGCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35969 0.67 0.924266
Target:  5'- gGCCGACcGGGCGCuGGAGGcgagcgcGCAGc -3'
miRNA:   3'- gCGGUUGuUCUGCGcCUUCCa------CGUCu -5'
23573 5' -54.1 NC_005261.1 + 36337 0.75 0.49292
Target:  5'- cCGCCAGCuagcaGAGAcugcCGCGGAGGGgggaGCGGAu -3'
miRNA:   3'- -GCGGUUG-----UUCU----GCGCCUUCCa---CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.