miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 22720 0.66 0.94448
Target:  5'- gGUgCAGCAGGugGUGcGggGGcUGCGGc -3'
miRNA:   3'- gCG-GUUGUUCugCGC-CuuCC-ACGUCu -5'
23573 5' -54.1 NC_005261.1 + 22736 0.7 0.796524
Target:  5'- gCGCCAGucGGGCGCGGGGcGGcgGCGGc -3'
miRNA:   3'- -GCGGUUguUCUGCGCCUU-CCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 22972 0.67 0.91859
Target:  5'- gGCCGA--GGAC-CGGGAGGaggcgGCGGAg -3'
miRNA:   3'- gCGGUUguUCUGcGCCUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 23465 0.66 0.948918
Target:  5'- gCGCCAggcccgcggcgGCGAGuGCGCGGGcccgccugggcAGGcGCGGGc -3'
miRNA:   3'- -GCGGU-----------UGUUC-UGCGCCU-----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 23616 0.68 0.872034
Target:  5'- cCGCCGcugcCGGGGCGCGGcGGGggucggGCGGc -3'
miRNA:   3'- -GCGGUu---GUUCUGCGCCuUCCa-----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 23733 0.69 0.814607
Target:  5'- gGCCGcgcCGAGGCGCguccGGGAGGgGCGGGc -3'
miRNA:   3'- gCGGUu--GUUCUGCG----CCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 24301 0.69 0.840415
Target:  5'- gGCCAGgaugaGGGugGgGGggGGgGCAGGc -3'
miRNA:   3'- gCGGUUg----UUCugCgCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 24553 0.73 0.63604
Target:  5'- gGuCCAcgaACGGGGCGCGGucGGcGCAGAg -3'
miRNA:   3'- gC-GGU---UGUUCUGCGCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 24711 0.68 0.856648
Target:  5'- gGCCGGCAGGGuaUGUGGGAGGgGCu-- -3'
miRNA:   3'- gCGGUUGUUCU--GCGCCUUCCaCGucu -5'
23573 5' -54.1 NC_005261.1 + 25871 0.78 0.366359
Target:  5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3'
miRNA:   3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5'
23573 5' -54.1 NC_005261.1 + 26570 0.73 0.604717
Target:  5'- cCGCCAcCGcGGCGCGGGAGG-GCuGGg -3'
miRNA:   3'- -GCGGUuGUuCUGCGCCUUCCaCGuCU- -5'
23573 5' -54.1 NC_005261.1 + 26661 0.71 0.728859
Target:  5'- gGCCAcACGcccGGACGCGGAGGGUacaCAGu -3'
miRNA:   3'- gCGGU-UGU---UCUGCGCCUUCCAc--GUCu -5'
23573 5' -54.1 NC_005261.1 + 26944 0.7 0.758577
Target:  5'- aGCgCGGCGgaAGGCGCGGGccGGGUGCu-- -3'
miRNA:   3'- gCG-GUUGU--UCUGCGCCU--UCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 27313 0.72 0.698357
Target:  5'- gGCCAACGc-GCGCGGGucaAGGggGCGGAa -3'
miRNA:   3'- gCGGUUGUucUGCGCCU---UCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 27669 0.68 0.872034
Target:  5'- gGCCGugGAG-CGCGGGu-GUGCGGc -3'
miRNA:   3'- gCGGUugUUCuGCGCCUucCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 27706 0.68 0.886525
Target:  5'- aCGCUcGCcGGAgcccucgcCGCGGGAGGaGCGGAg -3'
miRNA:   3'- -GCGGuUGuUCU--------GCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 28626 0.75 0.518638
Target:  5'- gCGCUGGCGAG-CGCGGggGGgggggaagggaagGCAGGg -3'
miRNA:   3'- -GCGGUUGUUCuGCGCCuuCCa------------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 29013 0.66 0.94448
Target:  5'- gGCCGAUgccaAAGACGCG-AGGGUuGgGGAu -3'
miRNA:   3'- gCGGUUG----UUCUGCGCcUUCCA-CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 29855 0.67 0.924266
Target:  5'- gCGCgGGCGcGGACGCGGGcaGGGaUGCGc- -3'
miRNA:   3'- -GCGgUUGU-UCUGCGCCU--UCC-ACGUcu -5'
23573 5' -54.1 NC_005261.1 + 29969 0.66 0.948918
Target:  5'- gGCCGugGAGACGCuGGccGcG-GCGGGg -3'
miRNA:   3'- gCGGUugUUCUGCG-CCuuC-CaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.