Results 41 - 60 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 5' | -54.1 | NC_005261.1 | + | 110248 | 0.78 | 0.383035 |
Target: 5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3' miRNA: 3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 8923 | 0.78 | 0.366359 |
Target: 5'- gCGCCAGCGcAGGCGCGGGgcgccGGGgGCGGGc -3' miRNA: 3'- -GCGGUUGU-UCUGCGCCU-----UCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 130388 | 0.78 | 0.366359 |
Target: 5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3' miRNA: 3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 76196 | 0.79 | 0.319398 |
Target: 5'- aGCCGGcCGAGcCGCGGGAGGacgGCAGAc -3' miRNA: 3'- gCGGUU-GUUCuGCGCCUUCCa--CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 35624 | 0.81 | 0.245367 |
Target: 5'- cCGCUGGCGgcgaGGACGCGGAAGGcGCGGGc -3' miRNA: 3'- -GCGGUUGU----UCUGCGCCUUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 52142 | 0.74 | 0.573583 |
Target: 5'- gCGCCGACGAGaACGCGcGGAGcaucaUGCAGGc -3' miRNA: 3'- -GCGGUUGUUC-UGCGC-CUUCc----ACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 56353 | 0.74 | 0.583927 |
Target: 5'- gGCC-GCAGGGgGCGGGuGGGUGguGAg -3' miRNA: 3'- gCGGuUGUUCUgCGCCU-UCCACguCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 131178 | 0.71 | 0.728859 |
Target: 5'- gGCCAcACGcccGGACGCGGAGGGUacaCAGu -3' miRNA: 3'- gCGGU-UGU---UCUGCGCCUUCCAc--GUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 35391 | 0.71 | 0.728859 |
Target: 5'- gGcCCAGCAcguGGCGCGGcgcGAGGcGCAGAc -3' miRNA: 3'- gC-GGUUGUu--CUGCGCC---UUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 118211 | 0.71 | 0.718765 |
Target: 5'- gGCCcGCu-GAcCGCGGAcGGGUGCGGGu -3' miRNA: 3'- gCGGuUGuuCU-GCGCCU-UCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 113641 | 0.71 | 0.718765 |
Target: 5'- gGCCGcCGGGACuGgGGGcGGGUGCAGGc -3' miRNA: 3'- gCGGUuGUUCUG-CgCCU-UCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 55801 | 0.71 | 0.708595 |
Target: 5'- gGCCGGCcgGGGGCGCGGAcggcGGGgccggcGCGGGg -3' miRNA: 3'- gCGGUUG--UUCUGCGCCU----UCCa-----CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 105634 | 0.71 | 0.707574 |
Target: 5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3' miRNA: 3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 131830 | 0.72 | 0.698357 |
Target: 5'- gGCCAACGc-GCGCGGGucaAGGggGCGGAa -3' miRNA: 3'- gCGGUUGUucUGCGCCU---UCCa-CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 6784 | 0.72 | 0.656919 |
Target: 5'- gCGCCcGCGAGGCGCGGcgcAAGGgggGCGc- -3' miRNA: 3'- -GCGGuUGUUCUGCGCC---UUCCa--CGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 38100 | 0.73 | 0.646485 |
Target: 5'- gGCCgAGCGGGGgcUGCGGccGGUGCGGGc -3' miRNA: 3'- gCGG-UUGUUCU--GCGCCuuCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 45357 | 0.73 | 0.646485 |
Target: 5'- uGCCAcUAugucuGAcCGCGGGAGGUGCGGc -3' miRNA: 3'- gCGGUuGUu----CU-GCGCCUUCCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 24553 | 0.73 | 0.63604 |
Target: 5'- gGuCCAcgaACGGGGCGCGGucGGcGCAGAg -3' miRNA: 3'- gC-GGU---UGUUCUGCGCCuuCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 26570 | 0.73 | 0.604717 |
Target: 5'- cCGCCAcCGcGGCGCGGGAGG-GCuGGg -3' miRNA: 3'- -GCGGUuGUuCUGCGCCUUCCaCGuCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 43773 | 0.73 | 0.593268 |
Target: 5'- aCGCCGACGcggagggggacgcGGACGCGGAcggggAGGgggGCGGc -3' miRNA: 3'- -GCGGUUGU-------------UCUGCGCCU-----UCCa--CGUCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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