miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 68584 0.66 0.948918
Target:  5'- cCGCCGagGCGGGcCGCGGGAGcGggGCcGAc -3'
miRNA:   3'- -GCGGU--UGUUCuGCGCCUUC-Ca-CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 124301 0.66 0.939799
Target:  5'- gGCC-GCA--ACGCGaccGGGGUGCAGAu -3'
miRNA:   3'- gCGGuUGUucUGCGCc--UUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 104986 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 62115 0.66 0.948918
Target:  5'- gCGCCGGCGcGGCGCGGug---GCGGu -3'
miRNA:   3'- -GCGGUUGUuCUGCGCCuuccaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 33787 0.66 0.939799
Target:  5'- cCGCCGGCGGcggcGACGCGGGcccgcucaAGcuGUGCGGc -3'
miRNA:   3'- -GCGGUUGUU----CUGCGCCU--------UC--CACGUCu -5'
23573 5' -54.1 NC_005261.1 + 22720 0.66 0.94448
Target:  5'- gGUgCAGCAGGugGUGcGggGGcUGCGGc -3'
miRNA:   3'- gCG-GUUGUUCugCGC-CuuCC-ACGUCu -5'
23573 5' -54.1 NC_005261.1 + 50013 0.66 0.929692
Target:  5'- cCGCCAGCGcgcGGGCGCccagccgccgcGcGAcGGUGCAGc -3'
miRNA:   3'- -GCGGUUGU---UCUGCG-----------C-CUuCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 11778 0.66 0.929692
Target:  5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3'
miRNA:   3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 55283 0.66 0.929692
Target:  5'- gCGCCGGaggcgGGGGCGCuGAAgagccGGUGCGGGg -3'
miRNA:   3'- -GCGGUUg----UUCUGCGcCUU-----CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 98811 0.66 0.929692
Target:  5'- uCGCCGGCGgcgugccggaAGACG-GGggGGUgggcguacaGCGGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCgCCuuCCA---------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68945 0.66 0.929692
Target:  5'- aCGCUgAACGAGGCGCGcGGGgaccuGGUGCGc- -3'
miRNA:   3'- -GCGG-UUGUUCUGCGC-CUU-----CCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 60083 0.66 0.939799
Target:  5'- cCGCCGGCAgcggcGGGCGCcGggGcG-GCGGGg -3'
miRNA:   3'- -GCGGUUGU-----UCUGCGcCuuC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 77305 0.66 0.939799
Target:  5'- gGCCcGCGGGucgccgcCGUGGAGGGccgGUAGAg -3'
miRNA:   3'- gCGGuUGUUCu------GCGCCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 89599 0.66 0.94448
Target:  5'- gGCCGgcgcagggGCGGGGCGUGGGgcuGGGcGCGGc -3'
miRNA:   3'- gCGGU--------UGUUCUGCGCCU---UCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 31116 0.66 0.948918
Target:  5'- uCGCCGGCGcgguGGCGCGGcuGGggGCGc- -3'
miRNA:   3'- -GCGGUUGUu---CUGCGCCuuCCa-CGUcu -5'
23573 5' -54.1 NC_005261.1 + 46766 0.66 0.948918
Target:  5'- gCGCCGcuGgGAGGCGCGGgcGGgGCc-- -3'
miRNA:   3'- -GCGGU--UgUUCUGCGCCuuCCaCGucu -5'
23573 5' -54.1 NC_005261.1 + 133531 0.66 0.94448
Target:  5'- gGCCGAUgccaAAGACGCG-AGGGUuGgGGAu -3'
miRNA:   3'- gCGGUUG----UUCUGCGCcUUCCA-CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 110060 0.66 0.939317
Target:  5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3'
miRNA:   3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 4201 0.66 0.938346
Target:  5'- gGCCAuggccGCGAG-CGCGGcggcggcguaguugAGGGUGUAGc -3'
miRNA:   3'- gCGGU-----UGUUCuGCGCC--------------UUCCACGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.