miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 96852 0.72 0.656919
Target:  5'- gGUCGACGgggggcucgggGGGCGCGGGuAGcGUGCGGAu -3'
miRNA:   3'- gCGGUUGU-----------UCUGCGCCU-UC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 6784 0.72 0.656919
Target:  5'- gCGCCcGCGAGGCGCGGcgcAAGGgggGCGc- -3'
miRNA:   3'- -GCGGuUGUUCUGCGCC---UUCCa--CGUcu -5'
23573 5' -54.1 NC_005261.1 + 73649 0.72 0.676679
Target:  5'- gCGCCGuccagguagacgcGCAcGACGCGGAGGGcgggcGCGGGc -3'
miRNA:   3'- -GCGGU-------------UGUuCUGCGCCUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 121646 0.72 0.681859
Target:  5'- cCGCCGGCGAG-CGCGGgcuguccgcgucggcGuAGGUGUAGGc -3'
miRNA:   3'- -GCGGUUGUUCuGCGCC---------------U-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 131830 0.72 0.698357
Target:  5'- gGCCAACGc-GCGCGGGucaAGGggGCGGAa -3'
miRNA:   3'- gCGGUUGUucUGCGCCU---UCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 27313 0.72 0.698357
Target:  5'- gGCCAACGc-GCGCGGGucaAGGggGCGGAa -3'
miRNA:   3'- gCGGUUGUucUGCGCCU---UCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 1116 0.71 0.707574
Target:  5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3'
miRNA:   3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 105634 0.71 0.707574
Target:  5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3'
miRNA:   3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 97246 0.71 0.708595
Target:  5'- gGCCGGCuGGGuCGCGGGgucGGGUGgCGGGa -3'
miRNA:   3'- gCGGUUGuUCU-GCGCCU---UCCAC-GUCU- -5'
23573 5' -54.1 NC_005261.1 + 55801 0.71 0.708595
Target:  5'- gGCCGGCcgGGGGCGCGGAcggcGGGgccggcGCGGGg -3'
miRNA:   3'- gCGGUUG--UUCUGCGCCU----UCCa-----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 118211 0.71 0.718765
Target:  5'- gGCCcGCu-GAcCGCGGAcGGGUGCGGGu -3'
miRNA:   3'- gCGGuUGuuCU-GCGCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 113641 0.71 0.718765
Target:  5'- gGCCGcCGGGACuGgGGGcGGGUGCAGGc -3'
miRNA:   3'- gCGGUuGUUCUG-CgCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 111463 0.71 0.718765
Target:  5'- gCGCCGGCGAGGCcaaaagGCGGGcGGGUG-AGAu -3'
miRNA:   3'- -GCGGUUGUUCUG------CGCCU-UCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 9123 0.71 0.718765
Target:  5'- gGCCGcCGGGACuGgGGGcGGGUGCAGGc -3'
miRNA:   3'- gCGGUuGUUCUG-CgCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 91981 0.71 0.728859
Target:  5'- cCGUCAGCAGGugGUccagcaggcGGu-GGUGCAGGu -3'
miRNA:   3'- -GCGGUUGUUCugCG---------CCuuCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 26661 0.71 0.728859
Target:  5'- gGCCAcACGcccGGACGCGGAGGGUacaCAGu -3'
miRNA:   3'- gCGGU-UGU---UCUGCGCCUUCCAc--GUCu -5'
23573 5' -54.1 NC_005261.1 + 43187 0.71 0.728859
Target:  5'- cCGCCGGCGAGGCagaGGu-GGUGCGGc -3'
miRNA:   3'- -GCGGUUGUUCUGcg-CCuuCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 87459 0.71 0.728859
Target:  5'- cCGCCGccGCGGuguGCGCuGAGGGUGCGGGu -3'
miRNA:   3'- -GCGGU--UGUUc--UGCGcCUUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 131178 0.71 0.728859
Target:  5'- gGCCAcACGcccGGACGCGGAGGGUacaCAGu -3'
miRNA:   3'- gCGGU-UGU---UCUGCGCCUUCCAc--GUCu -5'
23573 5' -54.1 NC_005261.1 + 35391 0.71 0.728859
Target:  5'- gGcCCAGCAcguGGCGCGGcgcGAGGcGCAGAc -3'
miRNA:   3'- gC-GGUUGUu--CUGCGCC---UUCCaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.