miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 10654 0.66 0.93487
Target:  5'- aCGCC--CAGGGCGCccu-GGUGCGGGc -3'
miRNA:   3'- -GCGGuuGUUCUGCGccuuCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 83122 0.66 0.93487
Target:  5'- cCGCCAGCcgcgcGCGCGGcacgcccugcAGGUGCGGc -3'
miRNA:   3'- -GCGGUUGuuc--UGCGCCu---------UCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 22332 0.66 0.93487
Target:  5'- gCGCUGACGAcGGCG-GGGAGGagGCGGc -3'
miRNA:   3'- -GCGGUUGUU-CUGCgCCUUCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 87730 0.66 0.93487
Target:  5'- gCGCUggcugGGCGAGGCGCuGggGGccgccGCGGAc -3'
miRNA:   3'- -GCGG-----UUGUUCUGCGcCuuCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 80114 0.66 0.93487
Target:  5'- aCGCuCGGCAGGcugcucGCGCGGcuGGUGCc-- -3'
miRNA:   3'- -GCG-GUUGUUC------UGCGCCuuCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 83202 0.66 0.93487
Target:  5'- uGCC-GCGuGACGUGGucgcAGGUGCAc- -3'
miRNA:   3'- gCGGuUGUuCUGCGCCu---UCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 14991 0.66 0.93487
Target:  5'- gCGCCGGCcgcgcccgGAG-CGCGGGAGGaggaguugucgGCGGGu -3'
miRNA:   3'- -GCGGUUG--------UUCuGCGCCUUCCa----------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 3677 0.66 0.93487
Target:  5'- gGCCGGCAGGcCGCGGcccGcUGCAGc -3'
miRNA:   3'- gCGGUUGUUCuGCGCCuu-CcACGUCu -5'
23573 5' -54.1 NC_005261.1 + 85828 0.66 0.93487
Target:  5'- gGCCAGCGAGAgcgUGUGGuuGGccucGUAGAg -3'
miRNA:   3'- gCGGUUGUUCU---GCGCCuuCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 30472 0.66 0.932829
Target:  5'- gCGCCAGCGagcgcugGGGCGUGGccccccccgcggccGAGGcGCAGc -3'
miRNA:   3'- -GCGGUUGU-------UCUGCGCC--------------UUCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 119713 0.66 0.929692
Target:  5'- cCGCCGuCAuuGACGCGGGcuGGGUcuacCAGAa -3'
miRNA:   3'- -GCGGUuGUu-CUGCGCCU--UCCAc---GUCU- -5'
23573 5' -54.1 NC_005261.1 + 81345 0.66 0.929692
Target:  5'- cCGUCGGCGGGGCGgGGGcu-UGCGGGg -3'
miRNA:   3'- -GCGGUUGUUCUGCgCCUuccACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 98811 0.66 0.929692
Target:  5'- uCGCCGGCGgcgugccggaAGACG-GGggGGUgggcguacaGCGGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCgCCuuCCA---------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68945 0.66 0.929692
Target:  5'- aCGCUgAACGAGGCGCGcGGGgaccuGGUGCGc- -3'
miRNA:   3'- -GCGG-UUGUUCUGCGC-CUU-----CCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 11778 0.66 0.929692
Target:  5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3'
miRNA:   3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 50013 0.66 0.929692
Target:  5'- cCGCCAGCGcgcGGGCGCccagccgccgcGcGAcGGUGCAGc -3'
miRNA:   3'- -GCGGUUGU---UCUGCG-----------C-CUuCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 55283 0.66 0.929692
Target:  5'- gCGCCGGaggcgGGGGCGCuGAAgagccGGUGCGGGg -3'
miRNA:   3'- -GCGGUUg----UUCUGCGcCUU-----CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 90225 0.66 0.929692
Target:  5'- uGCCGGCGGGGCGaCGGcGGcUGCGa- -3'
miRNA:   3'- gCGGUUGUUCUGC-GCCuUCcACGUcu -5'
23573 5' -54.1 NC_005261.1 + 56073 0.66 0.929692
Target:  5'- gCGCCGcGCuugcuGGCGCGGGcacGGUGguGGa -3'
miRNA:   3'- -GCGGU-UGuu---CUGCGCCUu--CCACguCU- -5'
23573 5' -54.1 NC_005261.1 + 116295 0.66 0.929692
Target:  5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3'
miRNA:   3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.