miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 120930 0.75 0.522643
Target:  5'- cCGCgAGCGccGGGCGCgGGAAGGUGgAGGc -3'
miRNA:   3'- -GCGgUUGU--UCUGCG-CCUUCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 84100 0.75 0.532706
Target:  5'- gCGCCAcggggGCGGGAUGgGGAGGGggGCAGc -3'
miRNA:   3'- -GCGGU-----UGUUCUGCgCCUUCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 58651 0.74 0.542838
Target:  5'- cCGCCAGCAgcaagaagcAGGCGCGGu-GGUacgGCAGGa -3'
miRNA:   3'- -GCGGUUGU---------UCUGCGCCuuCCA---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 54405 0.74 0.553032
Target:  5'- cCGCCAGC-GGAUGCucgccaucuucGGGcAGGUGCAGAc -3'
miRNA:   3'- -GCGGUUGuUCUGCG-----------CCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 33127 0.74 0.562255
Target:  5'- gCGCgGGCAAGccccCGCGGAAGGUccggggcGCGGAg -3'
miRNA:   3'- -GCGgUUGUUCu---GCGCCUUCCA-------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 11465 0.74 0.563283
Target:  5'- aGCgGAgcGGGCGCGGAGGG-GCGGGg -3'
miRNA:   3'- gCGgUUguUCUGCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136552 0.74 0.563283
Target:  5'- gGCCAGCuggugggggcagAAGGCGCGGGugggcGGGcGCAGAg -3'
miRNA:   3'- gCGGUUG------------UUCUGCGCCU-----UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 115982 0.74 0.563283
Target:  5'- aGCgGAgcGGGCGCGGAGGG-GCGGGg -3'
miRNA:   3'- gCGgUUguUCUGCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 52142 0.74 0.573583
Target:  5'- gCGCCGACGAGaACGCGcGGAGcaucaUGCAGGc -3'
miRNA:   3'- -GCGGUUGUUC-UGCGC-CUUCc----ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 42194 0.74 0.573583
Target:  5'- aGCgGGCGGGACGCGGcguuGAGcacGUGCAGGa -3'
miRNA:   3'- gCGgUUGUUCUGCGCC----UUC---CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 56353 0.74 0.583927
Target:  5'- gGCC-GCAGGGgGCGGGuGGGUGguGAg -3'
miRNA:   3'- gCGGuUGUUCUgCGCCU-UCCACguCU- -5'
23573 5' -54.1 NC_005261.1 + 43773 0.73 0.593268
Target:  5'- aCGCCGACGcggagggggacgcGGACGCGGAcggggAGGgggGCGGc -3'
miRNA:   3'- -GCGGUUGU-------------UCUGCGCCU-----UCCa--CGUCu -5'
23573 5' -54.1 NC_005261.1 + 71960 0.73 0.604717
Target:  5'- gCGUCGgcGCGGGGCGCGGAgcgcgcggcAGGUGCGc- -3'
miRNA:   3'- -GCGGU--UGUUCUGCGCCU---------UCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 72852 0.73 0.604717
Target:  5'- gCGCCAGCGcccAGGCGUGGAccgcGG-GCAGGu -3'
miRNA:   3'- -GCGGUUGU---UCUGCGCCUu---CCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 26570 0.73 0.604717
Target:  5'- cCGCCAcCGcGGCGCGGGAGG-GCuGGg -3'
miRNA:   3'- -GCGGUuGUuCUGCGCCUUCCaCGuCU- -5'
23573 5' -54.1 NC_005261.1 + 53436 0.73 0.625591
Target:  5'- cCGCCAGCccgucGGGCGuCGGGAGGUcgccggGCGGGa -3'
miRNA:   3'- -GCGGUUGu----UCUGC-GCCUUCCA------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 24553 0.73 0.63604
Target:  5'- gGuCCAcgaACGGGGCGCGGucGGcGCAGAg -3'
miRNA:   3'- gC-GGU---UGUUCUGCGCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 38100 0.73 0.646485
Target:  5'- gGCCgAGCGGGGgcUGCGGccGGUGCGGGc -3'
miRNA:   3'- gCGG-UUGUUCU--GCGCCuuCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 137056 0.73 0.646485
Target:  5'- cCGUCGGCA-GGCGCGGA-GGcGCGGGc -3'
miRNA:   3'- -GCGGUUGUuCUGCGCCUuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 45357 0.73 0.646485
Target:  5'- uGCCAcUAugucuGAcCGCGGGAGGUGCGGc -3'
miRNA:   3'- gCGGUuGUu----CU-GCGCCUUCCACGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.