miRNA display CGI


Results 1 - 20 of 267 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 116952 1.09 0.00354
Target:  5'- gCGCCAACAAGACGCGGAAGGUGCAGAa -3'
miRNA:   3'- -GCGGUUGUUCUGCGCCUUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 62926 0.86 0.129245
Target:  5'- cCGCCGACGGuGGCGCGGugcgcGAGGUGCAGGc -3'
miRNA:   3'- -GCGGUUGUU-CUGCGCC-----UUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 82162 0.84 0.16365
Target:  5'- gCGCCAGCAAGcgcgGCGCGGAAGGcGCGGc -3'
miRNA:   3'- -GCGGUUGUUC----UGCGCCUUCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 35624 0.81 0.245367
Target:  5'- cCGCUGGCGgcgaGGACGCGGAAGGcGCGGGc -3'
miRNA:   3'- -GCGGUUGU----UCUGCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 81899 0.79 0.318655
Target:  5'- cCGCCAGCAuGaACGCGGccagcuccuccuuGAGGUGCGGGa -3'
miRNA:   3'- -GCGGUUGUuC-UGCGCC-------------UUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 76196 0.79 0.319398
Target:  5'- aGCCGGcCGAGcCGCGGGAGGacgGCAGAc -3'
miRNA:   3'- gCGGUU-GUUCuGCGCCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 8923 0.78 0.366359
Target:  5'- gCGCCAGCGcAGGCGCGGGgcgccGGGgGCGGGc -3'
miRNA:   3'- -GCGGUUGU-UCUGCGCCU-----UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 25871 0.78 0.366359
Target:  5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3'
miRNA:   3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5'
23573 5' -54.1 NC_005261.1 + 130388 0.78 0.366359
Target:  5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3'
miRNA:   3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5'
23573 5' -54.1 NC_005261.1 + 110248 0.78 0.383035
Target:  5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3'
miRNA:   3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 93685 0.78 0.383035
Target:  5'- gCGCCGGCGGGGCGcCGGcGGGUGCc-- -3'
miRNA:   3'- -GCGGUUGUUCUGC-GCCuUCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 5731 0.78 0.383035
Target:  5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3'
miRNA:   3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 72646 0.76 0.454555
Target:  5'- gGCgAGCAGGAgcuCGCGGAccAGGUGCGGc -3'
miRNA:   3'- gCGgUUGUUCU---GCGCCU--UCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 44255 0.76 0.454555
Target:  5'- gGCCGACGccgcGGcGCGCGGggGG-GCGGGg -3'
miRNA:   3'- gCGGUUGU----UC-UGCGCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 38640 0.75 0.482216
Target:  5'- cCGCCGACGGuGACggugaaaGCGGcGGGUGCGGGc -3'
miRNA:   3'- -GCGGUUGUU-CUG-------CGCCuUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 72591 0.75 0.483185
Target:  5'- gCGCCAgagGCGAGAgGCGGAGuGGUGCc-- -3'
miRNA:   3'- -GCGGU---UGUUCUgCGCCUU-CCACGucu -5'
23573 5' -54.1 NC_005261.1 + 36337 0.75 0.49292
Target:  5'- cCGCCAGCuagcaGAGAcugcCGCGGAGGGgggaGCGGAu -3'
miRNA:   3'- -GCGGUUG-----UUCU----GCGCCUUCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 31473 0.75 0.512655
Target:  5'- cCGCCGGCAAGcuCGUGGcGGGcGCGGAg -3'
miRNA:   3'- -GCGGUUGUUCu-GCGCCuUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 80053 0.75 0.512655
Target:  5'- uCGCCAcugGCGgcGGGCGCGGggGGcGUGGGg -3'
miRNA:   3'- -GCGGU---UGU--UCUGCGCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 28626 0.75 0.518638
Target:  5'- gCGCUGGCGAG-CGCGGggGGgggggaagggaagGCAGGg -3'
miRNA:   3'- -GCGGUUGUUCuGCGCCuuCCa------------CGUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.