Results 1 - 20 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23573 | 5' | -54.1 | NC_005261.1 | + | 116952 | 1.09 | 0.00354 |
Target: 5'- gCGCCAACAAGACGCGGAAGGUGCAGAa -3' miRNA: 3'- -GCGGUUGUUCUGCGCCUUCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 62926 | 0.86 | 0.129245 |
Target: 5'- cCGCCGACGGuGGCGCGGugcgcGAGGUGCAGGc -3' miRNA: 3'- -GCGGUUGUU-CUGCGCC-----UUCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 82162 | 0.84 | 0.16365 |
Target: 5'- gCGCCAGCAAGcgcgGCGCGGAAGGcGCGGc -3' miRNA: 3'- -GCGGUUGUUC----UGCGCCUUCCaCGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 35624 | 0.81 | 0.245367 |
Target: 5'- cCGCUGGCGgcgaGGACGCGGAAGGcGCGGGc -3' miRNA: 3'- -GCGGUUGU----UCUGCGCCUUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 81899 | 0.79 | 0.318655 |
Target: 5'- cCGCCAGCAuGaACGCGGccagcuccuccuuGAGGUGCGGGa -3' miRNA: 3'- -GCGGUUGUuC-UGCGCC-------------UUCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 76196 | 0.79 | 0.319398 |
Target: 5'- aGCCGGcCGAGcCGCGGGAGGacgGCAGAc -3' miRNA: 3'- gCGGUU-GUUCuGCGCCUUCCa--CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 8923 | 0.78 | 0.366359 |
Target: 5'- gCGCCAGCGcAGGCGCGGGgcgccGGGgGCGGGc -3' miRNA: 3'- -GCGGUUGU-UCUGCGCCU-----UCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 25871 | 0.78 | 0.366359 |
Target: 5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3' miRNA: 3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 130388 | 0.78 | 0.366359 |
Target: 5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3' miRNA: 3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 110248 | 0.78 | 0.383035 |
Target: 5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3' miRNA: 3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 93685 | 0.78 | 0.383035 |
Target: 5'- gCGCCGGCGGGGCGcCGGcGGGUGCc-- -3' miRNA: 3'- -GCGGUUGUUCUGC-GCCuUCCACGucu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 5731 | 0.78 | 0.383035 |
Target: 5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3' miRNA: 3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 72646 | 0.76 | 0.454555 |
Target: 5'- gGCgAGCAGGAgcuCGCGGAccAGGUGCGGc -3' miRNA: 3'- gCGgUUGUUCU---GCGCCU--UCCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 44255 | 0.76 | 0.454555 |
Target: 5'- gGCCGACGccgcGGcGCGCGGggGG-GCGGGg -3' miRNA: 3'- gCGGUUGU----UC-UGCGCCuuCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 38640 | 0.75 | 0.482216 |
Target: 5'- cCGCCGACGGuGACggugaaaGCGGcGGGUGCGGGc -3' miRNA: 3'- -GCGGUUGUU-CUG-------CGCCuUCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 72591 | 0.75 | 0.483185 |
Target: 5'- gCGCCAgagGCGAGAgGCGGAGuGGUGCc-- -3' miRNA: 3'- -GCGGU---UGUUCUgCGCCUU-CCACGucu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 36337 | 0.75 | 0.49292 |
Target: 5'- cCGCCAGCuagcaGAGAcugcCGCGGAGGGgggaGCGGAu -3' miRNA: 3'- -GCGGUUG-----UUCU----GCGCCUUCCa---CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 31473 | 0.75 | 0.512655 |
Target: 5'- cCGCCGGCAAGcuCGUGGcGGGcGCGGAg -3' miRNA: 3'- -GCGGUUGUUCu-GCGCCuUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 80053 | 0.75 | 0.512655 |
Target: 5'- uCGCCAcugGCGgcGGGCGCGGggGGcGUGGGg -3' miRNA: 3'- -GCGGU---UGU--UCUGCGCCuuCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 28626 | 0.75 | 0.518638 |
Target: 5'- gCGCUGGCGAG-CGCGGggGGgggggaagggaagGCAGGg -3' miRNA: 3'- -GCGGUUGUUCuGCGCCuuCCa------------CGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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