miRNA display CGI


Results 1 - 20 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 62 0.7 0.805647
Target:  5'- gGCCGAaaucGGcgcGCGCGGGggcgGGGUGCGGGg -3'
miRNA:   3'- gCGGUUgu--UC---UGCGCCU----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 469 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 993 0.69 0.823394
Target:  5'- aGCgGAgGAGACGgGGgcGGgggGCGGGg -3'
miRNA:   3'- gCGgUUgUUCUGCgCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 1116 0.71 0.707574
Target:  5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3'
miRNA:   3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 2543 0.68 0.893421
Target:  5'- cCGCCAGCGccgcggcgcuGGGCGCGGGc-GUGUGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCGCCUucCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 3354 0.68 0.86445
Target:  5'- aCGCaCAGCAGGGgccCGCGG-GGGcGCGGGc -3'
miRNA:   3'- -GCG-GUUGUUCU---GCGCCuUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 3677 0.66 0.93487
Target:  5'- gGCCGGCAGGcCGCGGcccGcUGCAGc -3'
miRNA:   3'- gCGGUUGUUCuGCGCCuu-CcACGUCu -5'
23573 5' -54.1 NC_005261.1 + 4201 0.66 0.938346
Target:  5'- gGCCAuggccGCGAG-CGCGGcggcggcguaguugAGGGUGUAGc -3'
miRNA:   3'- gCGGU-----UGUUCuGCGCC--------------UUCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 5114 0.69 0.848634
Target:  5'- cCGCCAGCucGGCGCGGgcGGcccGCcGGc -3'
miRNA:   3'- -GCGGUUGuuCUGCGCCuuCCa--CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 5216 0.69 0.847821
Target:  5'- gCGCCcGCGGGuggcgcaGCGUGGAAgugaaagcGGUGCGGGu -3'
miRNA:   3'- -GCGGuUGUUC-------UGCGCCUU--------CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 5352 0.68 0.882275
Target:  5'- aGCCGGCuggucgguggauacgGAGACGgGGGAGGgagGgAGGg -3'
miRNA:   3'- gCGGUUG---------------UUCUGCgCCUUCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 5543 0.66 0.939317
Target:  5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3'
miRNA:   3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 5731 0.78 0.383035
Target:  5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3'
miRNA:   3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 6430 0.68 0.893421
Target:  5'- gCGCCGuc-AGGCGCGGcGGGcGCGGc -3'
miRNA:   3'- -GCGGUuguUCUGCGCCuUCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 6784 0.72 0.656919
Target:  5'- gCGCCcGCGAGGCGCGGcgcAAGGgggGCGc- -3'
miRNA:   3'- -GCGGuUGUUCUGCGCC---UUCCa--CGUcu -5'
23573 5' -54.1 NC_005261.1 + 6824 0.66 0.948918
Target:  5'- uGCCGGCAGcGGCGgGGGGcucGGUGgCGGu -3'
miRNA:   3'- gCGGUUGUU-CUGCgCCUU---CCAC-GUCu -5'
23573 5' -54.1 NC_005261.1 + 8029 0.66 0.939799
Target:  5'- cCGCCuGCAGGAgGCGGu-GGUGg--- -3'
miRNA:   3'- -GCGGuUGUUCUgCGCCuuCCACgucu -5'
23573 5' -54.1 NC_005261.1 + 8923 0.78 0.366359
Target:  5'- gCGCCAGCGcAGGCGCGGGgcgccGGGgGCGGGc -3'
miRNA:   3'- -GCGGUUGU-UCUGCGCCU-----UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 9123 0.71 0.718765
Target:  5'- gGCCGcCGGGACuGgGGGcGGGUGCAGGc -3'
miRNA:   3'- gCGGUuGUUCUG-CgCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 9132 0.68 0.879394
Target:  5'- uGUCGGCAGGACGaucagcccccGAAGGuUGCAGGa -3'
miRNA:   3'- gCGGUUGUUCUGCgc--------CUUCC-ACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.