Results 1 - 20 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 5' | -54.1 | NC_005261.1 | + | 124301 | 0.66 | 0.939799 |
Target: 5'- gGCC-GCA--ACGCGaccGGGGUGCAGAu -3' miRNA: 3'- gCGGuUGUucUGCGCc--UUCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 22332 | 0.66 | 0.93487 |
Target: 5'- gCGCUGACGAcGGCG-GGGAGGagGCGGc -3' miRNA: 3'- -GCGGUUGUU-CUGCgCCUUCCa-CGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 104986 | 0.66 | 0.94448 |
Target: 5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3' miRNA: 3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 30472 | 0.66 | 0.932829 |
Target: 5'- gCGCCAGCGagcgcugGGGCGUGGccccccccgcggccGAGGcGCAGc -3' miRNA: 3'- -GCGGUUGU-------UCUGCGCC--------------UUCCaCGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 77305 | 0.66 | 0.939799 |
Target: 5'- gGCCcGCGGGucgccgcCGUGGAGGGccgGUAGAg -3' miRNA: 3'- gCGGuUGUUCu------GCGCCUUCCa--CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 9500 | 0.66 | 0.939799 |
Target: 5'- uGCCGACAGcuACgGCGGgcGG-GCGGGg -3' miRNA: 3'- gCGGUUGUUc-UG-CGCCuuCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 108194 | 0.66 | 0.93487 |
Target: 5'- gGCCGGCAGGcCGCGGcccGcUGCAGc -3' miRNA: 3'- gCGGUUGUUCuGCGCCuu-CcACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 33787 | 0.66 | 0.939799 |
Target: 5'- cCGCCGGCGGcggcGACGCGGGcccgcucaAGcuGUGCGGc -3' miRNA: 3'- -GCGGUUGUU----CUGCGCCU--------UC--CACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 4201 | 0.66 | 0.938346 |
Target: 5'- gGCCAuggccGCGAG-CGCGGcggcggcguaguugAGGGUGUAGc -3' miRNA: 3'- gCGGU-----UGUUCuGCGCC--------------UUCCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 90225 | 0.66 | 0.929692 |
Target: 5'- uGCCGGCGGGGCGaCGGcGGcUGCGa- -3' miRNA: 3'- gCGGUUGUUCUGC-GCCuUCcACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 80114 | 0.66 | 0.93487 |
Target: 5'- aCGCuCGGCAGGcugcucGCGCGGcuGGUGCc-- -3' miRNA: 3'- -GCG-GUUGUUC------UGCGCCuuCCACGucu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 60083 | 0.66 | 0.939799 |
Target: 5'- cCGCCGGCAgcggcGGGCGCcGggGcG-GCGGGg -3' miRNA: 3'- -GCGGUUGU-----UCUGCGcCuuC-CaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 87730 | 0.66 | 0.93487 |
Target: 5'- gCGCUggcugGGCGAGGCGCuGggGGccgccGCGGAc -3' miRNA: 3'- -GCGG-----UUGUUCUGCGcCuuCCa----CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 110060 | 0.66 | 0.939317 |
Target: 5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3' miRNA: 3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 119713 | 0.66 | 0.929692 |
Target: 5'- cCGCCGuCAuuGACGCGGGcuGGGUcuacCAGAa -3' miRNA: 3'- -GCGGUuGUu-CUGCGCCU--UCCAc---GUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 22720 | 0.66 | 0.94448 |
Target: 5'- gGUgCAGCAGGugGUGcGggGGcUGCGGc -3' miRNA: 3'- gCG-GUUGUUCugCGC-CuuCC-ACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 56073 | 0.66 | 0.929692 |
Target: 5'- gCGCCGcGCuugcuGGCGCGGGcacGGUGguGGa -3' miRNA: 3'- -GCGGU-UGuu---CUGCGCCUu--CCACguCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 116295 | 0.66 | 0.929692 |
Target: 5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3' miRNA: 3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 10654 | 0.66 | 0.93487 |
Target: 5'- aCGCC--CAGGGCGCccu-GGUGCGGGc -3' miRNA: 3'- -GCGGuuGUUCUGCGccuuCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 8029 | 0.66 | 0.939799 |
Target: 5'- cCGCCuGCAGGAgGCGGu-GGUGg--- -3' miRNA: 3'- -GCGGuUGUUCUgCGCCuuCCACgucu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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