miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 9500 0.66 0.939799
Target:  5'- uGCCGACAGcuACgGCGGgcGG-GCGGGg -3'
miRNA:   3'- gCGGUUGUUc-UG-CGCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 10654 0.66 0.93487
Target:  5'- aCGCC--CAGGGCGCccu-GGUGCGGGc -3'
miRNA:   3'- -GCGGuuGUUCUGCGccuuCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 10936 0.68 0.856648
Target:  5'- cCGCCAGCc-GGCGgGGAGGGcUGCc-- -3'
miRNA:   3'- -GCGGUUGuuCUGCgCCUUCC-ACGucu -5'
23573 5' -54.1 NC_005261.1 + 11072 0.67 0.899424
Target:  5'- cCGCCAGCGcgucuagGGACG-GGAcGGgGCGGGa -3'
miRNA:   3'- -GCGGUUGU-------UCUGCgCCUuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 11465 0.74 0.563283
Target:  5'- aGCgGAgcGGGCGCGGAGGG-GCGGGg -3'
miRNA:   3'- gCGgUUguUCUGCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 11699 0.69 0.840415
Target:  5'- gCGUgGcCGAGGCGCGGcGGGcGCGGGc -3'
miRNA:   3'- -GCGgUuGUUCUGCGCCuUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 11778 0.66 0.929692
Target:  5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3'
miRNA:   3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 13666 0.67 0.906495
Target:  5'- cCGCCGcggGgGGGGCGCGGGgcgcgcgggcguGGG-GCGGGg -3'
miRNA:   3'- -GCGGU---UgUUCUGCGCCU------------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 14939 0.7 0.768263
Target:  5'- aCGCCAGCu-GGCGCuGGAAGcGaGCGGGc -3'
miRNA:   3'- -GCGGUUGuuCUGCG-CCUUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 14991 0.66 0.93487
Target:  5'- gCGCCGGCcgcgcccgGAG-CGCGGGAGGaggaguugucgGCGGGu -3'
miRNA:   3'- -GCGGUUG--------UUCuGCGCCUUCCa----------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 15502 0.67 0.924266
Target:  5'- uGCgGGCGGGGCGUGuGucGGcGUGCAGGc -3'
miRNA:   3'- gCGgUUGUUCUGCGC-Cu-UC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 15953 0.7 0.805647
Target:  5'- aGCCGgggGCGAGugGCGGgcGGgGgAGGg -3'
miRNA:   3'- gCGGU---UGUUCugCGCCuuCCaCgUCU- -5'
23573 5' -54.1 NC_005261.1 + 16154 0.68 0.869027
Target:  5'- uGCCGACcggcagggcaguagGGGGCGCGGGcguggcgGGGguggGCGGGg -3'
miRNA:   3'- gCGGUUG--------------UUCUGCGCCU-------UCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 16599 0.68 0.856648
Target:  5'- uCGCCGGCGGcGGCcgccgagcgGCGGGAGGcgGCGGu -3'
miRNA:   3'- -GCGGUUGUU-CUG---------CGCCUUCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 20573 0.67 0.912666
Target:  5'- gGCgCGGCGGGGCGCuuagcgGGggGGcGCGGc -3'
miRNA:   3'- gCG-GUUGUUCUGCG------CCuuCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 20642 0.7 0.768263
Target:  5'- uCGUCGGCAGGAUcgacagcgGCGGGcgcGGGgcgGCAGAa -3'
miRNA:   3'- -GCGGUUGUUCUG--------CGCCU---UCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 22090 0.69 0.823394
Target:  5'- gCGCCGcguGGGgGCGGGAGGgcggugUGCGGAg -3'
miRNA:   3'- -GCGGUuguUCUgCGCCUUCC------ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 22332 0.66 0.93487
Target:  5'- gCGCUGACGAcGGCG-GGGAGGagGCGGc -3'
miRNA:   3'- -GCGGUUGUU-CUGCgCCUUCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 22552 0.67 0.910227
Target:  5'- gGCCGcgGCGAGAuaCGgGGAGGGgagggggagagcgGCGGAg -3'
miRNA:   3'- gCGGU--UGUUCU--GCgCCUUCCa------------CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.