Results 21 - 40 of 267 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23573 | 5' | -54.1 | NC_005261.1 | + | 45357 | 0.73 | 0.646485 |
Target: 5'- uGCCAcUAugucuGAcCGCGGGAGGUGCGGc -3' miRNA: 3'- gCGGUuGUu----CU-GCGCCUUCCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 62926 | 0.86 | 0.129245 |
Target: 5'- cCGCCGACGGuGGCGCGGugcgcGAGGUGCAGGc -3' miRNA: 3'- -GCGGUUGUU-CUGCGCC-----UUCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 76196 | 0.79 | 0.319398 |
Target: 5'- aGCCGGcCGAGcCGCGGGAGGacgGCAGAc -3' miRNA: 3'- gCGGUU-GUUCuGCGCCUUCCa--CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 130388 | 0.78 | 0.366359 |
Target: 5'- gGCCAGCAAGuaGCGCGGAGGcUGCAa- -3' miRNA: 3'- gCGGUUGUUC--UGCGCCUUCcACGUcu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 8923 | 0.78 | 0.366359 |
Target: 5'- gCGCCAGCGcAGGCGCGGGgcgccGGGgGCGGGc -3' miRNA: 3'- -GCGGUUGU-UCUGCGCCU-----UCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 110248 | 0.78 | 0.383035 |
Target: 5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3' miRNA: 3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 72646 | 0.76 | 0.454555 |
Target: 5'- gGCgAGCAGGAgcuCGCGGAccAGGUGCGGc -3' miRNA: 3'- gCGgUUGUUCU---GCGCCU--UCCACGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 72591 | 0.75 | 0.483185 |
Target: 5'- gCGCCAgagGCGAGAgGCGGAGuGGUGCc-- -3' miRNA: 3'- -GCGGU---UGUUCUgCGCCUU-CCACGucu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 31473 | 0.75 | 0.512655 |
Target: 5'- cCGCCGGCAAGcuCGUGGcGGGcGCGGAg -3' miRNA: 3'- -GCGGUUGUUCu-GCGCCuUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 28626 | 0.75 | 0.518638 |
Target: 5'- gCGCUGGCGAG-CGCGGggGGgggggaagggaagGCAGGg -3' miRNA: 3'- -GCGGUUGUUCuGCGCCuuCCa------------CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 54405 | 0.74 | 0.553032 |
Target: 5'- cCGCCAGC-GGAUGCucgccaucuucGGGcAGGUGCAGAc -3' miRNA: 3'- -GCGGUUGuUCUGCG-----------CCU-UCCACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 33127 | 0.74 | 0.562255 |
Target: 5'- gCGCgGGCAAGccccCGCGGAAGGUccggggcGCGGAg -3' miRNA: 3'- -GCGgUUGUUCu---GCGCCUUCCA-------CGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 115982 | 0.74 | 0.563283 |
Target: 5'- aGCgGAgcGGGCGCGGAGGG-GCGGGg -3' miRNA: 3'- gCGgUUguUCUGCGCCUUCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 42194 | 0.74 | 0.573583 |
Target: 5'- aGCgGGCGGGACGCGGcguuGAGcacGUGCAGGa -3' miRNA: 3'- gCGgUUGUUCUGCGCC----UUC---CACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 52142 | 0.74 | 0.573583 |
Target: 5'- gCGCCGACGAGaACGCGcGGAGcaucaUGCAGGc -3' miRNA: 3'- -GCGGUUGUUC-UGCGC-CUUCc----ACGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 56353 | 0.74 | 0.583927 |
Target: 5'- gGCC-GCAGGGgGCGGGuGGGUGguGAg -3' miRNA: 3'- gCGGuUGUUCUgCGCCU-UCCACguCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 43773 | 0.73 | 0.593268 |
Target: 5'- aCGCCGACGcggagggggacgcGGACGCGGAcggggAGGgggGCGGc -3' miRNA: 3'- -GCGGUUGU-------------UCUGCGCCU-----UCCa--CGUCu -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 26570 | 0.73 | 0.604717 |
Target: 5'- cCGCCAcCGcGGCGCGGGAGG-GCuGGg -3' miRNA: 3'- -GCGGUuGUuCUGCGCCUUCCaCGuCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 24553 | 0.73 | 0.63604 |
Target: 5'- gGuCCAcgaACGGGGCGCGGucGGcGCAGAg -3' miRNA: 3'- gC-GGU---UGUUCUGCGCCuuCCaCGUCU- -5' |
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23573 | 5' | -54.1 | NC_005261.1 | + | 38100 | 0.73 | 0.646485 |
Target: 5'- gGCCgAGCGGGGgcUGCGGccGGUGCGGGc -3' miRNA: 3'- gCGG-UUGUUCU--GCGCCuuCCACGUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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