miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 74702 0.66 0.948918
Target:  5'- gGCCGccGCGcGGGCGCGGAaccGGGccgcgGCAGc -3'
miRNA:   3'- gCGGU--UGU-UCUGCGCCU---UCCa----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 50013 0.66 0.929692
Target:  5'- cCGCCAGCGcgcGGGCGCccagccgccgcGcGAcGGUGCAGc -3'
miRNA:   3'- -GCGGUUGU---UCUGCG-----------C-CUuCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 55283 0.66 0.929692
Target:  5'- gCGCCGGaggcgGGGGCGCuGAAgagccGGUGCGGGg -3'
miRNA:   3'- -GCGGUUg----UUCUGCGcCUU-----CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 5543 0.66 0.939317
Target:  5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3'
miRNA:   3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35212 0.66 0.94448
Target:  5'- uGCCGG-GAGugGCGGcugGAGGggacccgGCAGGa -3'
miRNA:   3'- gCGGUUgUUCugCGCC---UUCCa------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 91023 0.67 0.924266
Target:  5'- uGCUGAUgaAGGGCGUGGAccuGGUGCgcaAGAa -3'
miRNA:   3'- gCGGUUG--UUCUGCGCCUu--CCACG---UCU- -5'
23573 5' -54.1 NC_005261.1 + 102859 0.66 0.929692
Target:  5'- gGCCAGCAGcGCGUccaGGAAGGcgaacucggGCGGGa -3'
miRNA:   3'- gCGGUUGUUcUGCG---CCUUCCa--------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 136374 0.66 0.94448
Target:  5'- aGCCGuaGCGAGACGaggugcCGGGacuGGGgGCGGAc -3'
miRNA:   3'- gCGGU--UGUUCUGC------GCCU---UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 85828 0.66 0.93487
Target:  5'- gGCCAGCGAGAgcgUGUGGuuGGccucGUAGAg -3'
miRNA:   3'- gCGGUUGUUCU---GCGCCuuCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 83122 0.66 0.93487
Target:  5'- cCGCCAGCcgcgcGCGCGGcacgcccugcAGGUGCGGc -3'
miRNA:   3'- -GCGGUUGuuc--UGCGCCu---------UCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 84286 0.66 0.948485
Target:  5'- cCGCCGGCGGccccggccccggcGGCGCcGAAGGcGUAGGu -3'
miRNA:   3'- -GCGGUUGUU-------------CUGCGcCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 93900 0.66 0.948918
Target:  5'- uCGCCAGCGacugcGGGCGCGGcgcccGCGGGc -3'
miRNA:   3'- -GCGGUUGU-----UCUGCGCCuuccaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 22972 0.67 0.91859
Target:  5'- gGCCGA--GGAC-CGGGAGGaggcgGCGGAg -3'
miRNA:   3'- gCGGUUguUCUGcGCCUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 44036 0.67 0.91859
Target:  5'- cCGCCGcGCGgcGGcCGCGGgcGGgcaGCAGAu -3'
miRNA:   3'- -GCGGU-UGU--UCuGCGCCuuCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68945 0.66 0.929692
Target:  5'- aCGCUgAACGAGGCGCGcGGGgaccuGGUGCGc- -3'
miRNA:   3'- -GCGG-UUGUUCUGCGC-CUU-----CCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 119510 0.66 0.939799
Target:  5'- cCGCCAACAGcACGCGGccccGGUccccGCGGc -3'
miRNA:   3'- -GCGGUUGUUcUGCGCCuu--CCA----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 32926 0.66 0.94448
Target:  5'- gGgCGGC-GGGCGgGGggGGgGCGGGg -3'
miRNA:   3'- gCgGUUGuUCUGCgCCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 83202 0.66 0.93487
Target:  5'- uGCC-GCGuGACGUGGucgcAGGUGCAc- -3'
miRNA:   3'- gCGGuUGUuCUGCGCCu---UCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 3677 0.66 0.93487
Target:  5'- gGCCGGCAGGcCGCGGcccGcUGCAGc -3'
miRNA:   3'- gCGGUUGUUCuGCGCCuu-CcACGUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.