miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 83122 0.66 0.93487
Target:  5'- cCGCCAGCcgcgcGCGCGGcacgcccugcAGGUGCGGc -3'
miRNA:   3'- -GCGGUUGuuc--UGCGCCu---------UCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 100589 0.66 0.939317
Target:  5'- uCGCCcAgGAGcgccgccACGCGGccgcgcAGGUGCAGGu -3'
miRNA:   3'- -GCGGuUgUUC-------UGCGCCu-----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 29013 0.66 0.94448
Target:  5'- gGCCGAUgccaAAGACGCG-AGGGUuGgGGAu -3'
miRNA:   3'- gCGGUUG----UUCUGCGCcUUCCA-CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 23465 0.66 0.948918
Target:  5'- gCGCCAggcccgcggcgGCGAGuGCGCGGGcccgccugggcAGGcGCGGGc -3'
miRNA:   3'- -GCGGU-----------UGUUC-UGCGCCU-----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 36962 0.67 0.924266
Target:  5'- cCGCC-GCGcGGCGCaGAGcucGGUGCGGGc -3'
miRNA:   3'- -GCGGuUGUuCUGCGcCUU---CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 81345 0.66 0.929692
Target:  5'- cCGUCGGCGGGGCGgGGGcu-UGCGGGg -3'
miRNA:   3'- -GCGGUUGUUCUGCgCCUuccACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 37001 0.66 0.939799
Target:  5'- aGCCcGCGGGcuGCGCGGGgccaguuugcGGGgGCGGGa -3'
miRNA:   3'- gCGGuUGUUC--UGCGCCU----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 43772 0.66 0.948918
Target:  5'- uGCuCGugGGGcggcGCGCGGAGGGcgccGCGGGu -3'
miRNA:   3'- gCG-GUugUUC----UGCGCCUUCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 98811 0.66 0.929692
Target:  5'- uCGCCGGCGgcgugccggaAGACG-GGggGGUgggcguacaGCGGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCgCCuuCCA---------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68584 0.66 0.948918
Target:  5'- cCGCCGagGCGGGcCGCGGGAGcGggGCcGAc -3'
miRNA:   3'- -GCGGU--UGUUCuGCGCCUUC-Ca-CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 121091 0.66 0.939317
Target:  5'- cCGCCAGCGccuccAGGCcguGCGGGuccucuaGGGcGCGGAg -3'
miRNA:   3'- -GCGGUUGU-----UCUG---CGCCU-------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 14991 0.66 0.93487
Target:  5'- gCGCCGGCcgcgcccgGAG-CGCGGGAGGaggaguugucgGCGGGu -3'
miRNA:   3'- -GCGGUUG--------UUCuGCGCCUUCCa----------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 469 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 138140 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 49252 0.66 0.94448
Target:  5'- cCGCCGcgGCGGcgucGGCGCgcacguccgcgaGGAAGGcGCAGAa -3'
miRNA:   3'- -GCGGU--UGUU----CUGCG------------CCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 98150 0.67 0.91859
Target:  5'- uCGgCGGCAAGGcCGCGGGcggcGGGUGUguccuuGGAg -3'
miRNA:   3'- -GCgGUUGUUCU-GCGCCU----UCCACG------UCU- -5'
23573 5' -54.1 NC_005261.1 + 15502 0.67 0.924266
Target:  5'- uGCgGGCGGGGCGUGuGucGGcGUGCAGGc -3'
miRNA:   3'- gCGgUUGUUCUGCGC-Cu-UC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 11778 0.66 0.929692
Target:  5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3'
miRNA:   3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68945 0.66 0.929692
Target:  5'- aCGCUgAACGAGGCGCGcGGGgaccuGGUGCGc- -3'
miRNA:   3'- -GCGG-UUGUUCUGCGC-CUU-----CCACGUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.