miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 58145 0.67 0.926466
Target:  5'- cCGCCAcguagaucuucacgcGCGAGucgcuGCGCacGAGGUGCAGGc -3'
miRNA:   3'- -GCGGU---------------UGUUC-----UGCGccUUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 37001 0.66 0.939799
Target:  5'- aGCCcGCGGGcuGCGCGGGgccaguuugcGGGgGCGGGa -3'
miRNA:   3'- gCGGuUGUUC--UGCGCCU----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 43772 0.66 0.948918
Target:  5'- uGCuCGugGGGcggcGCGCGGAGGGcgccGCGGGu -3'
miRNA:   3'- gCG-GUugUUC----UGCGCCUUCCa---CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 102859 0.66 0.929692
Target:  5'- gGCCAGCAGcGCGUccaGGAAGGcgaacucggGCGGGa -3'
miRNA:   3'- gCGGUUGUUcUGCG---CCUUCCa--------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 68584 0.66 0.948918
Target:  5'- cCGCCGagGCGGGcCGCGGGAGcGggGCcGAc -3'
miRNA:   3'- -GCGGU--UGUUCuGCGCCUUC-Ca-CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 103610 0.68 0.879394
Target:  5'- gCGgCGGCA--GCGCGGGAGGcgGCGGc -3'
miRNA:   3'- -GCgGUUGUucUGCGCCUUCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 20651 0.66 0.948918
Target:  5'- cCGCCcGCAccgccGGugGCGGcAGcG-GCAGAg -3'
miRNA:   3'- -GCGGuUGU-----UCugCGCCuUC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 5352 0.68 0.882275
Target:  5'- aGCCGGCuggucgguggauacgGAGACGgGGGAGGgagGgAGGg -3'
miRNA:   3'- gCGGUUG---------------UUCUGCgCCUUCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 2543 0.68 0.893421
Target:  5'- cCGCCAGCGccgcggcgcuGGGCGCGGGc-GUGUGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCGCCUucCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 50586 0.67 0.900079
Target:  5'- cCGCC-GCGAG-CG-GGGAGG-GCAGGg -3'
miRNA:   3'- -GCGGuUGUUCuGCgCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 13666 0.67 0.906495
Target:  5'- cCGCCGcggGgGGGGCGCGGGgcgcgcgggcguGGG-GCGGGg -3'
miRNA:   3'- -GCGGU---UgUUCUGCGCCU------------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 98150 0.67 0.91859
Target:  5'- uCGgCGGCAAGGcCGCGGGcggcGGGUGUguccuuGGAg -3'
miRNA:   3'- -GCgGUUGUUCU-GCGCCU----UCCACG------UCU- -5'
23573 5' -54.1 NC_005261.1 + 15502 0.67 0.924266
Target:  5'- uGCgGGCGGGGCGUGuGucGGcGUGCAGGc -3'
miRNA:   3'- gCGgUUGUUCUGCGC-Cu-UC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 55283 0.66 0.929692
Target:  5'- gCGCCGGaggcgGGGGCGCuGAAgagccGGUGCGGGg -3'
miRNA:   3'- -GCGGUUg----UUCUGCGcCUU-----CCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 98811 0.66 0.929692
Target:  5'- uCGCCGGCGgcgugccggaAGACG-GGggGGUgggcguacaGCGGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCgCCuuCCA---------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 83122 0.66 0.93487
Target:  5'- cCGCCAGCcgcgcGCGCGGcacgcccugcAGGUGCGGc -3'
miRNA:   3'- -GCGGUUGuuc--UGCGCCu---------UCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 100589 0.66 0.939317
Target:  5'- uCGCCcAgGAGcgccgccACGCGGccgcgcAGGUGCAGGu -3'
miRNA:   3'- -GCGGuUgUUC-------UGCGCCu-----UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 469 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 138140 0.66 0.94448
Target:  5'- gGCCGGCGGGaugGCGCGGGgaggagaggAGGgagGgGGAg -3'
miRNA:   3'- gCGGUUGUUC---UGCGCCU---------UCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 49252 0.66 0.94448
Target:  5'- cCGCCGcgGCGGcgucGGCGCgcacguccgcgaGGAAGGcGCAGAa -3'
miRNA:   3'- -GCGGU--UGUU----CUGCG------------CCUUCCaCGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.