miRNA display CGI


Results 21 - 40 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 128133 0.68 0.872034
Target:  5'- cCGCCGcugcCGGGGCGCGGcGGGggucggGCGGc -3'
miRNA:   3'- -GCGGUu---GUUCUGCGCCuUCCa-----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 127982 0.66 0.948918
Target:  5'- gCGCCAggcccgcggcgGCGAGuGCGCGGGcccgccugggcAGGcGCGGGc -3'
miRNA:   3'- -GCGGU-----------UGUUC-UGCGCCU-----------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 127650 0.7 0.768263
Target:  5'- gCGCCGGgGGGcGCGCGGGuucGGG-GCGGGa -3'
miRNA:   3'- -GCGGUUgUUC-UGCGCCU---UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 127490 0.67 0.91859
Target:  5'- gGCCGA--GGAC-CGGGAGGaggcgGCGGAg -3'
miRNA:   3'- gCGGUUguUCUGcGCCUUCCa----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 127253 0.7 0.796524
Target:  5'- gCGCCAGucGGGCGCGGGGcGGcgGCGGc -3'
miRNA:   3'- -GCGGUUguUCUGCGCCUU-CCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 127069 0.67 0.910227
Target:  5'- gGCCGcgGCGAGAuaCGgGGAGGGgagggggagagcgGCGGAg -3'
miRNA:   3'- gCGGU--UGUUCU--GCgCCUUCCa------------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 126944 0.69 0.831999
Target:  5'- gGCCAgggGCGccGGGCGCGGggGcG-GCAGc -3'
miRNA:   3'- gCGGU---UGU--UCUGCGCCuuC-CaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 126608 0.69 0.823394
Target:  5'- gCGCCGcguGGGgGCGGGAGGgcggugUGCGGAg -3'
miRNA:   3'- -GCGGUuguUCUgCGCCUUCC------ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 125366 0.69 0.840415
Target:  5'- cCGCCgGGCAgagGGGCGCuGGAacGGGUGCGu- -3'
miRNA:   3'- -GCGG-UUGU---UCUGCG-CCU--UCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 124301 0.66 0.939799
Target:  5'- gGCC-GCA--ACGCGaccGGGGUGCAGAu -3'
miRNA:   3'- gCGGuUGUucUGCGCc--UUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 124161 0.68 0.86368
Target:  5'- uCGCCGACGuggcccuGGACGCGGccugccUGCGGAc -3'
miRNA:   3'- -GCGGUUGU-------UCUGCGCCuucc--ACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 121646 0.72 0.681859
Target:  5'- cCGCCGGCGAG-CGCGGgcuguccgcgucggcGuAGGUGUAGGc -3'
miRNA:   3'- -GCGGUUGUUCuGCGCC---------------U-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 121091 0.66 0.939317
Target:  5'- cCGCCAGCGccuccAGGCcguGCGGGuccucuaGGGcGCGGAg -3'
miRNA:   3'- -GCGGUUGU-----UCUG---CGCCU-------UCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 120930 0.75 0.522643
Target:  5'- cCGCgAGCGccGGGCGCgGGAAGGUGgAGGc -3'
miRNA:   3'- -GCGgUUGU--UCUGCG-CCUUCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 119713 0.66 0.929692
Target:  5'- cCGCCGuCAuuGACGCGGGcuGGGUcuacCAGAa -3'
miRNA:   3'- -GCGGUuGUu-CUGCGCCU--UCCAc---GUCU- -5'
23573 5' -54.1 NC_005261.1 + 119510 0.66 0.939799
Target:  5'- cCGCCAACAGcACGCGGccccGGUccccGCGGc -3'
miRNA:   3'- -GCGGUUGUUcUGCGCCuu--CCA----CGUCu -5'
23573 5' -54.1 NC_005261.1 + 118697 0.68 0.886525
Target:  5'- gCGCUGGCGGuGACGCGGGccGUGCugcGGGg -3'
miRNA:   3'- -GCGGUUGUU-CUGCGCCUucCACG---UCU- -5'
23573 5' -54.1 NC_005261.1 + 118211 0.71 0.718765
Target:  5'- gGCCcGCu-GAcCGCGGAcGGGUGCGGGu -3'
miRNA:   3'- gCGGuUGuuCU-GCGCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 117611 0.67 0.91859
Target:  5'- gGCCGGCAgucccGGAUGCGGGccAGGgGCGc- -3'
miRNA:   3'- gCGGUUGU-----UCUGCGCCU--UCCaCGUcu -5'
23573 5' -54.1 NC_005261.1 + 116952 1.09 0.00354
Target:  5'- gCGCCAACAAGACGCGGAAGGUGCAGAa -3'
miRNA:   3'- -GCGGUUGUUCUGCGCCUUCCACGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.