miRNA display CGI


Results 41 - 60 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 116295 0.66 0.929692
Target:  5'- gGCCuuuauuuGCGGGGCGgaggggGGAAGGgggGCGGAg -3'
miRNA:   3'- gCGGu------UGUUCUGCg-----CCUUCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 115982 0.74 0.563283
Target:  5'- aGCgGAgcGGGCGCGGAGGG-GCGGGg -3'
miRNA:   3'- gCGgUUguUCUGCGCCUUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 115590 0.67 0.899424
Target:  5'- cCGCCAGCGcgucuagGGACG-GGAcGGgGCGGGa -3'
miRNA:   3'- -GCGGUUGU-------UCUGCgCCUuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 115042 0.67 0.900079
Target:  5'- uGCCAGCAcccuGGCGaaGggGG-GCGGGg -3'
miRNA:   3'- gCGGUUGUu---CUGCgcCuuCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 113732 0.7 0.796524
Target:  5'- aGCCAAU-GGACG-GGAAGGUGCc-- -3'
miRNA:   3'- gCGGUUGuUCUGCgCCUUCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 113641 0.71 0.718765
Target:  5'- gGCCGcCGGGACuGgGGGcGGGUGCAGGc -3'
miRNA:   3'- gCGGUuGUUCUG-CgCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 111601 0.68 0.872034
Target:  5'- aCGCgGAguGGGCGCGGcuGGGcUGCGGc -3'
miRNA:   3'- -GCGgUUguUCUGCGCCu-UCC-ACGUCu -5'
23573 5' -54.1 NC_005261.1 + 111463 0.71 0.718765
Target:  5'- gCGCCGGCGAGGCcaaaagGCGGGcGGGUG-AGAu -3'
miRNA:   3'- -GCGGUUGUUCUG------CGCCU-UCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 110519 0.68 0.879394
Target:  5'- gGCCGucgucuGCGGGGCGCaGGAGGGcGCGc- -3'
miRNA:   3'- gCGGU------UGUUCUGCG-CCUUCCaCGUcu -5'
23573 5' -54.1 NC_005261.1 + 110248 0.78 0.383035
Target:  5'- gGCCGGCGGGagaagcgcGCGCGGAAGGUGaGGGu -3'
miRNA:   3'- gCGGUUGUUC--------UGCGCCUUCCACgUCU- -5'
23573 5' -54.1 NC_005261.1 + 110060 0.66 0.939317
Target:  5'- gCGCgCAGCGAGACGgGGGgcgcccgAGcG-GCGGAg -3'
miRNA:   3'- -GCG-GUUGUUCUGCgCCU-------UC-CaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 109869 0.68 0.882275
Target:  5'- aGCCGGCuggucgguggauacgGAGACGgGGGAGGgagGgAGGg -3'
miRNA:   3'- gCGGUUG---------------UUCUGCgCCUUCCa--CgUCU- -5'
23573 5' -54.1 NC_005261.1 + 109632 0.69 0.848634
Target:  5'- cCGCCAGCucGGCGCGGgcGGcccGCcGGc -3'
miRNA:   3'- -GCGGUUGuuCUGCGCCuuCCa--CGuCU- -5'
23573 5' -54.1 NC_005261.1 + 108903 0.68 0.886525
Target:  5'- cCGCCGgcgaGCGGGGCGCGGGgucGGGgcccaGCAc- -3'
miRNA:   3'- -GCGGU----UGUUCUGCGCCU---UCCa----CGUcu -5'
23573 5' -54.1 NC_005261.1 + 108194 0.66 0.93487
Target:  5'- gGCCGGCAGGcCGCGGcccGcUGCAGc -3'
miRNA:   3'- gCGGUUGUUCuGCGCCuu-CcACGUCu -5'
23573 5' -54.1 NC_005261.1 + 107507 0.68 0.86445
Target:  5'- gCGCCAcGCAGGcCGCGccGAAGG-GCAGc -3'
miRNA:   3'- -GCGGU-UGUUCuGCGC--CUUCCaCGUCu -5'
23573 5' -54.1 NC_005261.1 + 107060 0.68 0.893421
Target:  5'- cCGCCAGCGccgcggcgcuGGGCGCGGGc-GUGUGGu -3'
miRNA:   3'- -GCGGUUGU----------UCUGCGCCUucCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 106823 0.66 0.939799
Target:  5'- cCGCCAGCA--GCGCGu--GGUGCGc- -3'
miRNA:   3'- -GCGGUUGUucUGCGCcuuCCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 105634 0.71 0.707574
Target:  5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3'
miRNA:   3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 105510 0.68 0.872034
Target:  5'- aGCgGACgGAGACGgGGgcGGgggGCGGGg -3'
miRNA:   3'- gCGgUUG-UUCUGCgCCuuCCa--CGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.