miRNA display CGI


Results 61 - 80 of 267 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23573 5' -54.1 NC_005261.1 + 45357 0.73 0.646485
Target:  5'- uGCCAcUAugucuGAcCGCGGGAGGUGCGGc -3'
miRNA:   3'- gCGGUuGUu----CU-GCGCCUUCCACGUCu -5'
23573 5' -54.1 NC_005261.1 + 38100 0.73 0.646485
Target:  5'- gGCCgAGCGGGGgcUGCGGccGGUGCGGGc -3'
miRNA:   3'- gCGG-UUGUUCU--GCGCCuuCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 84800 0.71 0.747788
Target:  5'- aCGcCCGACGggcuggcGGACgGCGGggGGccGCAGAc -3'
miRNA:   3'- -GC-GGUUGU-------UCUG-CGCCuuCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 26944 0.7 0.758577
Target:  5'- aGCgCGGCGgaAGGCGCGGGccGGGUGCu-- -3'
miRNA:   3'- gCG-GUUGU--UCUGCGCCU--UCCACGucu -5'
23573 5' -54.1 NC_005261.1 + 74684 0.7 0.758577
Target:  5'- gCGCCAGCGGGcacggcGCGCGGGcAGGccGCGGu -3'
miRNA:   3'- -GCGGUUGUUC------UGCGCCU-UCCa-CGUCu -5'
23573 5' -54.1 NC_005261.1 + 20642 0.7 0.768263
Target:  5'- uCGUCGGCAGGAUcgacagcgGCGGGcgcGGGgcgGCAGAa -3'
miRNA:   3'- -GCGGUUGUUCUG--------CGCCU---UCCa--CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 101344 0.7 0.768263
Target:  5'- gCGCCuugGCGaggaaGGGCGCGGGccAGcGUGCGGGg -3'
miRNA:   3'- -GCGGu--UGU-----UCUGCGCCU--UC-CACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 55718 0.7 0.777822
Target:  5'- gGCCGACucGGGCGaagaGGggGGUGgAGc -3'
miRNA:   3'- gCGGUUGu-UCUGCg---CCuuCCACgUCu -5'
23573 5' -54.1 NC_005261.1 + 69571 0.7 0.787246
Target:  5'- aCGCCGGC--GGCGCGGgcGGcGguGAc -3'
miRNA:   3'- -GCGGUUGuuCUGCGCCuuCCaCguCU- -5'
23573 5' -54.1 NC_005261.1 + 102732 0.7 0.796524
Target:  5'- uGCCAGCGGGGCaaGGgcGGgugccgcgGCAGGg -3'
miRNA:   3'- gCGGUUGUUCUGcgCCuuCCa-------CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 60850 0.71 0.742841
Target:  5'- gGCCGGCAGGgggugcgccggagacGCGCGGccuGGUGCAc- -3'
miRNA:   3'- gCGGUUGUUC---------------UGCGCCuu-CCACGUcu -5'
23573 5' -54.1 NC_005261.1 + 87459 0.71 0.728859
Target:  5'- cCGCCGccGCGGuguGCGCuGAGGGUGCGGGu -3'
miRNA:   3'- -GCGGU--UGUUc--UGCGcCUUCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 6784 0.72 0.656919
Target:  5'- gCGCCcGCGAGGCGCGGcgcAAGGgggGCGc- -3'
miRNA:   3'- -GCGGuUGUUCUGCGCC---UUCCa--CGUcu -5'
23573 5' -54.1 NC_005261.1 + 131830 0.72 0.698357
Target:  5'- gGCCAACGc-GCGCGGGucaAGGggGCGGAa -3'
miRNA:   3'- gCGGUUGUucUGCGCCU---UCCa-CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 105634 0.71 0.707574
Target:  5'- aCGCgGACGacgaggaGGACGCGGAGGacGCGGAc -3'
miRNA:   3'- -GCGgUUGU-------UCUGCGCCUUCcaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 55801 0.71 0.708595
Target:  5'- gGCCGGCcgGGGGCGCGGAcggcGGGgccggcGCGGGg -3'
miRNA:   3'- gCGGUUG--UUCUGCGCCU----UCCa-----CGUCU- -5'
23573 5' -54.1 NC_005261.1 + 113641 0.71 0.718765
Target:  5'- gGCCGcCGGGACuGgGGGcGGGUGCAGGc -3'
miRNA:   3'- gCGGUuGUUCUG-CgCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 118211 0.71 0.718765
Target:  5'- gGCCcGCu-GAcCGCGGAcGGGUGCGGGu -3'
miRNA:   3'- gCGGuUGuuCU-GCGCCU-UCCACGUCU- -5'
23573 5' -54.1 NC_005261.1 + 35391 0.71 0.728859
Target:  5'- gGcCCAGCAcguGGCGCGGcgcGAGGcGCAGAc -3'
miRNA:   3'- gC-GGUUGUu--CUGCGCC---UUCCaCGUCU- -5'
23573 5' -54.1 NC_005261.1 + 131178 0.71 0.728859
Target:  5'- gGCCAcACGcccGGACGCGGAGGGUacaCAGu -3'
miRNA:   3'- gCGGU-UGU---UCUGCGCCUUCCAc--GUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.