Results 61 - 80 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 103629 | 0.67 | 0.671024 |
Target: 5'- aGCGCGUCGgccaGGCCgucgUCGUCgaagccgcacUCGGCc -3' miRNA: 3'- -UGUGCAGCag--CCGGa---GGCAG----------AGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 109855 | 0.67 | 0.671024 |
Target: 5'- gGCGCGg-GUCGGCCagCCGgcuggUCGGUGg -3' miRNA: 3'- -UGUGCagCAGCCGGa-GGCag---AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 13073 | 0.67 | 0.671024 |
Target: 5'- gGCGCGUcCGcCGGC--CCGUCggcgggCGGCGg -3' miRNA: 3'- -UGUGCA-GCaGCCGgaGGCAGa-----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 48751 | 0.67 | 0.674956 |
Target: 5'- uGCGCGUaGUCGcGCCccCCGggcggcccgacgagCUCGGCGa -3' miRNA: 3'- -UGUGCAgCAGC-CGGa-GGCa-------------GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 69036 | 0.67 | 0.680845 |
Target: 5'- -gACGUCGUUGGCCg-CGUCcgcgaCGGUGc -3' miRNA: 3'- ugUGCAGCAGCCGGagGCAGa----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 35006 | 0.67 | 0.680845 |
Target: 5'- aACACcugCGgugCGGCCggCGUCUCGGUc -3' miRNA: 3'- -UGUGca-GCa--GCCGGagGCAGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 98985 | 0.67 | 0.680845 |
Target: 5'- aGCACGUCGuccUCGGCaauCUUcagCGUCgcgagCGGCGg -3' miRNA: 3'- -UGUGCAGC---AGCCG---GAG---GCAGa----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 32722 | 0.67 | 0.680845 |
Target: 5'- gGCGCGcUGgu-GCaCUUCGUCUCGGCGg -3' miRNA: 3'- -UGUGCaGCagcCG-GAGGCAGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 55587 | 0.67 | 0.684763 |
Target: 5'- cGCGCGUgcuacgaccaccacaUGUCGGCCUCgcUGaUC-CGGCGg -3' miRNA: 3'- -UGUGCA---------------GCAGCCGGAG--GC-AGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 42861 | 0.67 | 0.689652 |
Target: 5'- aGCGCGUCGUguccgagCGcGCCUuaaacuuggCCGgCUCGGCa -3' miRNA: 3'- -UGUGCAGCA-------GC-CGGA---------GGCaGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 75552 | 0.67 | 0.690628 |
Target: 5'- gGCGCGUgcagcuggcggaCGUggcgcUGGCCUCCuUCUCGGUc -3' miRNA: 3'- -UGUGCA------------GCA-----GCCGGAGGcAGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 44022 | 0.67 | 0.690628 |
Target: 5'- gGCGCGgCGggCGGCCgCCG-CgCGGCGg -3' miRNA: 3'- -UGUGCaGCa-GCCGGaGGCaGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 48828 | 0.67 | 0.700365 |
Target: 5'- gACGcCGUCGUCGGCC-CCGcCgcCGcGCa -3' miRNA: 3'- -UGU-GCAGCAGCCGGaGGCaGa-GC-CGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 87387 | 0.67 | 0.700365 |
Target: 5'- -gAUGUCcUCGGCCgUCGUCUcgaCGGCGc -3' miRNA: 3'- ugUGCAGcAGCCGGaGGCAGA---GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 67505 | 0.67 | 0.700365 |
Target: 5'- cGCGCGUaGUaGGCCagCGUCgccgCGGCGc -3' miRNA: 3'- -UGUGCAgCAgCCGGagGCAGa---GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 106840 | 0.67 | 0.700365 |
Target: 5'- uGCGCGUCGUCcaGCCcgCCGcCUgGGgGg -3' miRNA: 3'- -UGUGCAGCAGc-CGGa-GGCaGAgCCgC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 109221 | 0.67 | 0.71005 |
Target: 5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3' miRNA: 3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 71327 | 0.67 | 0.71005 |
Target: 5'- aGCACGUaGcCGGCCgcgagCgCGUCcUCGGUGa -3' miRNA: 3'- -UGUGCAgCaGCCGGa----G-GCAG-AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 4704 | 0.67 | 0.71005 |
Target: 5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3' miRNA: 3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 108582 | 0.67 | 0.713906 |
Target: 5'- cGCGCGaaggCGUUGGCCUCgcccacgggcaccagCGcCUCgGGCGg -3' miRNA: 3'- -UGUGCa---GCAGCCGGAG---------------GCaGAG-CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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