Results 41 - 60 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 104332 | 0.69 | 0.592023 |
Target: 5'- cGCGCGUCcagCGGCCggCCGUCgcgCaGCGc -3' miRNA: 3'- -UGUGCAGca-GCCGGa-GGCAGa--GcCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 38377 | 0.69 | 0.592023 |
Target: 5'- gGCGCG-CGgCGGCCggugCCG-CUgGGCGg -3' miRNA: 3'- -UGUGCaGCaGCCGGa---GGCaGAgCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 61354 | 0.69 | 0.597931 |
Target: 5'- -aGCGUgcCGUCGGCCUCC-UCgccgggcgccaggCGGCGc -3' miRNA: 3'- ugUGCA--GCAGCCGGAGGcAGa------------GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 71052 | 0.69 | 0.601874 |
Target: 5'- cCACGcCGUgGGCCagCCGcCgcgCGGCGg -3' miRNA: 3'- uGUGCaGCAgCCGGa-GGCaGa--GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 129857 | 0.68 | 0.610757 |
Target: 5'- cCGCGaCGUCGGCCaUCaCGauguugcUCUCGGCc -3' miRNA: 3'- uGUGCaGCAGCCGG-AG-GC-------AGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 66188 | 0.68 | 0.611745 |
Target: 5'- gGCACGUCc---GCCUCCGagUCGGCc -3' miRNA: 3'- -UGUGCAGcagcCGGAGGCagAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 19442 | 0.68 | 0.615697 |
Target: 5'- cACACGUCGUCGGggcCguugaggaagacguuCUCCGUCUUgacgucccgaugGGCGa -3' miRNA: 3'- -UGUGCAGCAGCC---G---------------GAGGCAGAG------------CCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 102453 | 0.68 | 0.631522 |
Target: 5'- gGCGCccgCG--GGCCUCCuGUCUCGGCc -3' miRNA: 3'- -UGUGca-GCagCCGGAGG-CAGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 90543 | 0.68 | 0.641415 |
Target: 5'- gACGCGgcgccgCGggCGGCCgugCUGcgCUCGGCGc -3' miRNA: 3'- -UGUGCa-----GCa-GCCGGa--GGCa-GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 7893 | 0.68 | 0.641415 |
Target: 5'- aGCGCGUCcccgagcgCGGCCgggCCGUCcaUGGCGc -3' miRNA: 3'- -UGUGCAGca------GCCGGa--GGCAGa-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 68888 | 0.68 | 0.651302 |
Target: 5'- cCGCGUCGUCGccGUCUCCGUCgcugUCGcCGu -3' miRNA: 3'- uGUGCAGCAGC--CGGAGGCAG----AGCcGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 39451 | 0.68 | 0.651302 |
Target: 5'- cGCACG-CG-CGGCCggcggCCGg--CGGCGg -3' miRNA: 3'- -UGUGCaGCaGCCGGa----GGCagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 92005 | 0.68 | 0.651302 |
Target: 5'- gACGCGcUCGUccacgCGGCCUUCGag-CGGCGc -3' miRNA: 3'- -UGUGC-AGCA-----GCCGGAGGCagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 51117 | 0.68 | 0.651302 |
Target: 5'- -gACGUCG-CGGCCgCUGUgaucaUUCGGCGc -3' miRNA: 3'- ugUGCAGCaGCCGGaGGCA-----GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 115445 | 0.68 | 0.660187 |
Target: 5'- uCGCGcUCG-CGGCCggacuccUCCGcCUCGGUGu -3' miRNA: 3'- uGUGC-AGCaGCCGG-------AGGCaGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 70581 | 0.68 | 0.661174 |
Target: 5'- cGCGCG-CGgacgggCGGCC-CgCGuUCUCGGCGu -3' miRNA: 3'- -UGUGCaGCa-----GCCGGaG-GC-AGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 93985 | 0.68 | 0.661174 |
Target: 5'- cCGCGgCGUCGGCCgCgCG-CUgGGCGg -3' miRNA: 3'- uGUGCaGCAGCCGGaG-GCaGAgCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 99762 | 0.67 | 0.669056 |
Target: 5'- aGCACGUCGgacggggagaggCGGCCcgggUCCcaGUCgCGGCGc -3' miRNA: 3'- -UGUGCAGCa-----------GCCGG----AGG--CAGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 49030 | 0.67 | 0.671024 |
Target: 5'- cCACG-CGUCGGCCUCgGcgcccgCgagCGGCu -3' miRNA: 3'- uGUGCaGCAGCCGGAGgCa-----Ga--GCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 103629 | 0.67 | 0.671024 |
Target: 5'- aGCGCGUCGgccaGGCCgucgUCGUCgaagccgcacUCGGCc -3' miRNA: 3'- -UGUGCAGCag--CCGGa---GGCAG----------AGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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