miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 59859 0.71 0.47756
Target:  5'- uGCGCGggaCGUCGGCCUCguaCGggugC-CGGCGg -3'
miRNA:   3'- -UGUGCa--GCAGCCGGAG---GCa---GaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 35237 0.71 0.47756
Target:  5'- aGCGCGUgG-CGGCCgCCGUgUCGcGCGc -3'
miRNA:   3'- -UGUGCAgCaGCCGGaGGCAgAGC-CGC- -5'
23574 3' -59.9 NC_005261.1 + 101423 0.71 0.47756
Target:  5'- uCACGaCGUCGGCCgCCGaggCGGCGc -3'
miRNA:   3'- uGUGCaGCAGCCGGaGGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 106942 0.71 0.486725
Target:  5'- gACACG-CGcaccUCGGCCcgggcgcgcUCCGcCUCGGCGc -3'
miRNA:   3'- -UGUGCaGC----AGCCGG---------AGGCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 103498 0.7 0.495972
Target:  5'- -gACGUCGUCGGCg-CCG-CggaCGGCGg -3'
miRNA:   3'- ugUGCAGCAGCCGgaGGCaGa--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 43410 0.7 0.495972
Target:  5'- -gGCGcCGggggCGGCCUCCGcCgcCGGCGg -3'
miRNA:   3'- ugUGCaGCa---GCCGGAGGCaGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 122707 0.7 0.505298
Target:  5'- cCGCGcCGcCGGCCgcgCCGUCgauguucacgUCGGCGc -3'
miRNA:   3'- uGUGCaGCaGCCGGa--GGCAG----------AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 125254 0.7 0.505298
Target:  5'- -gGCGUCG-CGGCCcucgCUGUCUgGGUGu -3'
miRNA:   3'- ugUGCAGCaGCCGGa---GGCAGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 47447 0.7 0.505298
Target:  5'- aGCGCG-CGcCGGCCgCCGcagcggcCUCGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGaGGCa------GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 61203 0.7 0.514699
Target:  5'- cGCGCG-CG-CGGCCUCgGcgUCGGCGa -3'
miRNA:   3'- -UGUGCaGCaGCCGGAGgCagAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 124865 0.7 0.533707
Target:  5'- -gGCGUCGUC-GCCUUCGUCgucUGGCc -3'
miRNA:   3'- ugUGCAGCAGcCGGAGGCAGa--GCCGc -5'
23574 3' -59.9 NC_005261.1 + 49235 0.7 0.533707
Target:  5'- cGCGCGcagGUCGGCCgCCGcCgCGGCGg -3'
miRNA:   3'- -UGUGCag-CAGCCGGaGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 65461 0.7 0.543305
Target:  5'- gACGCGUgCG-CGGCCgCCGUgCUgGGCa -3'
miRNA:   3'- -UGUGCA-GCaGCCGGaGGCA-GAgCCGc -5'
23574 3' -59.9 NC_005261.1 + 23859 0.7 0.543305
Target:  5'- aGCACGUacuucUCGGCCaCCGaCUCGGCc -3'
miRNA:   3'- -UGUGCAgc---AGCCGGaGGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 118234 0.7 0.543305
Target:  5'- cCGCGgcCG-CGGCCUacgCCGUCUgCGGCGu -3'
miRNA:   3'- uGUGCa-GCaGCCGGA---GGCAGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 22215 0.69 0.552958
Target:  5'- uGCGCGcCGUCGGCggcucaggCCGcCUCgGGCGg -3'
miRNA:   3'- -UGUGCaGCAGCCGga------GGCaGAG-CCGC- -5'
23574 3' -59.9 NC_005261.1 + 15291 0.69 0.562662
Target:  5'- cGCGCgGUCG-CGGCCUCCGggUCGuCGg -3'
miRNA:   3'- -UGUG-CAGCaGCCGGAGGCagAGCcGC- -5'
23574 3' -59.9 NC_005261.1 + 5053 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 109571 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 63407 0.69 0.582201
Target:  5'- aACAUgagGUCGUCGGCgUCCGaCUCGcCGu -3'
miRNA:   3'- -UGUG---CAGCAGCCGgAGGCaGAGCcGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.