miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 96285 0.66 0.757376
Target:  5'- cGCugG-CG-CGGCUUCgGcCUCGGCc -3'
miRNA:   3'- -UGugCaGCaGCCGGAGgCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 94613 0.66 0.757376
Target:  5'- cGCGCGcccUCGcCGccGCCggcgCCGUCgUCGGCGc -3'
miRNA:   3'- -UGUGC---AGCaGC--CGGa---GGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 67307 0.66 0.757376
Target:  5'- cGCGCGccgcCGUCGGCCgccgCCGcgCUCaGCc -3'
miRNA:   3'- -UGUGCa---GCAGCCGGa---GGCa-GAGcCGc -5'
23574 3' -59.9 NC_005261.1 + 82056 0.66 0.751813
Target:  5'- cGCGCGUCGUCcuccccgcgGGCC-CCGccgcugccgccaccCUCGGCc -3'
miRNA:   3'- -UGUGCAGCAG---------CCGGaGGCa-------------GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 58376 0.66 0.748084
Target:  5'- -gGCGaCGUCGGCCUCCag---GGCGa -3'
miRNA:   3'- ugUGCaGCAGCCGGAGGcagagCCGC- -5'
23574 3' -59.9 NC_005261.1 + 118895 0.66 0.748084
Target:  5'- gGCGCGcUGgUGGCCUgCGUCUgggucCGGCGc -3'
miRNA:   3'- -UGUGCaGCaGCCGGAgGCAGA-----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121234 0.66 0.748084
Target:  5'- cGCAUGgCGcCGGCCagcUCCGaCUCGGgGu -3'
miRNA:   3'- -UGUGCaGCaGCCGG---AGGCaGAGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 122608 0.66 0.748084
Target:  5'- cCGCGUUGUCGuGCCUgUG-CUugaaCGGCGa -3'
miRNA:   3'- uGUGCAGCAGC-CGGAgGCaGA----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 80255 0.66 0.748084
Target:  5'- gGCGCGgccgCG-CGcGCCUgCGUCgcCGGCGu -3'
miRNA:   3'- -UGUGCa---GCaGC-CGGAgGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 63458 0.66 0.738698
Target:  5'- uGCGCG-CGUCGaCCUCCG-CgccugUGGCGc -3'
miRNA:   3'- -UGUGCaGCAGCcGGAGGCaGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 91975 0.66 0.738698
Target:  5'- gACACgGUCG-CGGCCgCCGcCgCGGCc -3'
miRNA:   3'- -UGUG-CAGCaGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 62102 0.66 0.738698
Target:  5'- uGCACGauggCGUUGGCCacgCCGUCcugcaGGCc -3'
miRNA:   3'- -UGUGCa---GCAGCCGGa--GGCAGag---CCGc -5'
23574 3' -59.9 NC_005261.1 + 19195 0.66 0.729224
Target:  5'- gGCGCGUuacCGUCGGCgacgUCCGcUCauucgUCGGCGc -3'
miRNA:   3'- -UGUGCA---GCAGCCGg---AGGC-AG-----AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 124987 0.66 0.729224
Target:  5'- -gACGgcgCGcCGGCCUCgGcCUCGGgGc -3'
miRNA:   3'- ugUGCa--GCaGCCGGAGgCaGAGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 3012 0.66 0.729224
Target:  5'- gACGCGcUCGgccgUGGCCcucugcgCCGcCUCGGCc -3'
miRNA:   3'- -UGUGC-AGCa---GCCGGa------GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 47994 0.66 0.729224
Target:  5'- aACACGgCGUCGcaGCCgCCGUCgccccgcCGGCa -3'
miRNA:   3'- -UGUGCaGCAGC--CGGaGGCAGa------GCCGc -5'
23574 3' -59.9 NC_005261.1 + 12798 0.66 0.729224
Target:  5'- aGCuCGUCGUCGGCgucgcugCCGUcCUCcGCGa -3'
miRNA:   3'- -UGuGCAGCAGCCGga-----GGCA-GAGcCGC- -5'
23574 3' -59.9 NC_005261.1 + 80034 0.66 0.729224
Target:  5'- -gGCGUCGcCGucGCCgCCGUCgccacuggCGGCGg -3'
miRNA:   3'- ugUGCAGCaGC--CGGaGGCAGa-------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 6644 0.66 0.729224
Target:  5'- cGCGCG-CGUaGGCCUcggCCGUCgCGGgGg -3'
miRNA:   3'- -UGUGCaGCAgCCGGA---GGCAGaGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 3196 0.66 0.729224
Target:  5'- cGCAgG-CGUCGGCCUcgCCGcCgCGGCc -3'
miRNA:   3'- -UGUgCaGCAGCCGGA--GGCaGaGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.