miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 34460 0.66 0.775642
Target:  5'- gGCACGggcCGggGGCC-CCGUaccugCGGCGg -3'
miRNA:   3'- -UGUGCa--GCagCCGGaGGCAga---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121534 0.66 0.775642
Target:  5'- aGCuccuCGUCGcugUCGgaGCCgCCGUCcUCGGCGa -3'
miRNA:   3'- -UGu---GCAGC---AGC--CGGaGGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 63898 0.66 0.775642
Target:  5'- cCGCGccugCGGUCUCgGUCUCGGUc -3'
miRNA:   3'- uGUGCagcaGCCGGAGgCAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 131485 0.66 0.775642
Target:  5'- aGCGCGcCGUCGacGCCUUCuUC-CGGCa -3'
miRNA:   3'- -UGUGCaGCAGC--CGGAGGcAGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 120588 0.66 0.775642
Target:  5'- -aGCGUCGU-GGCCgucgccugCgGcCUCGGCGc -3'
miRNA:   3'- ugUGCAGCAgCCGGa-------GgCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 21705 0.66 0.775642
Target:  5'- gGCGCGgagCGgcgGGCCUCgCGcCgccgCGGCGg -3'
miRNA:   3'- -UGUGCa--GCag-CCGGAG-GCaGa---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 79798 0.66 0.775642
Target:  5'- uACGCGUgCGUgGGCUUCUcg--CGGCGg -3'
miRNA:   3'- -UGUGCA-GCAgCCGGAGGcagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 18602 0.66 0.774739
Target:  5'- -gGCGUUGUCGGCCacgCCGcagUgcacguacagcggCUCGGCa -3'
miRNA:   3'- ugUGCAGCAGCCGGa--GGC---A-------------GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 44274 0.66 0.766565
Target:  5'- -gGCGUCGaCGGCCgaccgcCCGgaggCGGCGc -3'
miRNA:   3'- ugUGCAGCaGCCGGa-----GGCaga-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 48316 0.66 0.766565
Target:  5'- gGCGCGUCGggccCGGgCUCgGgggCgcgcgCGGCGa -3'
miRNA:   3'- -UGUGCAGCa---GCCgGAGgCa--Ga----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 101522 0.66 0.766565
Target:  5'- cGCccuCGUCG-CGGUCgcgcgCCGcCUCGGCc -3'
miRNA:   3'- -UGu--GCAGCaGCCGGa----GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 118609 0.66 0.766565
Target:  5'- uCGCGcUGUCGGCCguugcccuggCCGcCgCGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGa---------GGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 43852 0.66 0.766565
Target:  5'- -gGCGagGacgCGGCCgcgUCGUCcUCGGCGg -3'
miRNA:   3'- ugUGCagCa--GCCGGa--GGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 81331 0.66 0.766565
Target:  5'- cGC-CGUCGUCGGgg-CCGUCggcggGGCGg -3'
miRNA:   3'- -UGuGCAGCAGCCggaGGCAGag---CCGC- -5'
23574 3' -59.9 NC_005261.1 + 12655 0.66 0.766565
Target:  5'- gGCGCGUggCGUUugcgaGGCCUCCcUCU-GGCGu -3'
miRNA:   3'- -UGUGCA--GCAG-----CCGGAGGcAGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 75328 0.66 0.76382
Target:  5'- cGCGCGgagcccugugaccuUCGUCGGCCUCgUGgagcagCUgcCGGCGu -3'
miRNA:   3'- -UGUGC--------------AGCAGCCGGAG-GCa-----GA--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 67843 0.66 0.757376
Target:  5'- gGCGCGUCGugcgugUCGGCCacggcgCCGUggaGGCGc -3'
miRNA:   3'- -UGUGCAGC------AGCCGGa-----GGCAgagCCGC- -5'
23574 3' -59.9 NC_005261.1 + 36209 0.66 0.757376
Target:  5'- -gACGuUCG-CGGCCUCgGg--CGGCGg -3'
miRNA:   3'- ugUGC-AGCaGCCGGAGgCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 12252 0.66 0.757376
Target:  5'- cCAUGUUG-CGGCCcCCGUCgcCGaGCGa -3'
miRNA:   3'- uGUGCAGCaGCCGGaGGCAGa-GC-CGC- -5'
23574 3' -59.9 NC_005261.1 + 87948 0.66 0.757376
Target:  5'- cGCGCGcCGccaCGGCCcgCCGg--CGGCGg -3'
miRNA:   3'- -UGUGCaGCa--GCCGGa-GGCagaGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.