Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 124987 | 0.66 | 0.729224 |
Target: 5'- -gACGgcgCGcCGGCCUCgGcCUCGGgGc -3' miRNA: 3'- ugUGCa--GCaGCCGGAGgCaGAGCCgC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 131485 | 0.66 | 0.775642 |
Target: 5'- aGCGCGcCGUCGacGCCUUCuUC-CGGCa -3' miRNA: 3'- -UGUGCaGCAGC--CGGAGGcAGaGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 12655 | 0.66 | 0.766565 |
Target: 5'- gGCGCGUggCGUUugcgaGGCCUCCcUCU-GGCGu -3' miRNA: 3'- -UGUGCA--GCAG-----CCGGAGGcAGAgCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 3012 | 0.66 | 0.729224 |
Target: 5'- gACGCGcUCGgccgUGGCCcucugcgCCGcCUCGGCc -3' miRNA: 3'- -UGUGC-AGCa---GCCGGa------GGCaGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 12252 | 0.66 | 0.757376 |
Target: 5'- cCAUGUUG-CGGCCcCCGUCgcCGaGCGa -3' miRNA: 3'- uGUGCAGCaGCCGGaGGCAGa-GC-CGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 44274 | 0.66 | 0.766565 |
Target: 5'- -gGCGUCGaCGGCCgaccgcCCGgaggCGGCGc -3' miRNA: 3'- ugUGCAGCaGCCGGa-----GGCaga-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 69918 | 0.66 | 0.728272 |
Target: 5'- gGCACGUCGaagCGGCCgcagaggUCCG-CgcccgCGGCc -3' miRNA: 3'- -UGUGCAGCa--GCCGG-------AGGCaGa----GCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 6644 | 0.66 | 0.729224 |
Target: 5'- cGCGCG-CGUaGGCCUcggCCGUCgCGGgGg -3' miRNA: 3'- -UGUGCaGCAgCCGGA---GGCAGaGCCgC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 19195 | 0.66 | 0.729224 |
Target: 5'- gGCGCGUuacCGUCGGCgacgUCCGcUCauucgUCGGCGc -3' miRNA: 3'- -UGUGCA---GCAGCCGg---AGGC-AG-----AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 21705 | 0.66 | 0.775642 |
Target: 5'- gGCGCGgagCGgcgGGCCUCgCGcCgccgCGGCGg -3' miRNA: 3'- -UGUGCa--GCag-CCGGAG-GCaGa---GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 36209 | 0.66 | 0.757376 |
Target: 5'- -gACGuUCG-CGGCCUCgGg--CGGCGg -3' miRNA: 3'- ugUGC-AGCaGCCGGAGgCagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 63458 | 0.66 | 0.738698 |
Target: 5'- uGCGCG-CGUCGaCCUCCG-CgccugUGGCGc -3' miRNA: 3'- -UGUGCaGCAGCcGGAGGCaGa----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 3196 | 0.66 | 0.729224 |
Target: 5'- cGCAgG-CGUCGGCCUcgCCGcCgCGGCc -3' miRNA: 3'- -UGUgCaGCAGCCGGA--GGCaGaGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 80255 | 0.66 | 0.748084 |
Target: 5'- gGCGCGgccgCG-CGcGCCUgCGUCgcCGGCGu -3' miRNA: 3'- -UGUGCa---GCaGC-CGGAgGCAGa-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 82056 | 0.66 | 0.751813 |
Target: 5'- cGCGCGUCGUCcuccccgcgGGCC-CCGccgcugccgccaccCUCGGCc -3' miRNA: 3'- -UGUGCAGCAG---------CCGGaGGCa-------------GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 67843 | 0.66 | 0.757376 |
Target: 5'- gGCGCGUCGugcgugUCGGCCacggcgCCGUggaGGCGc -3' miRNA: 3'- -UGUGCAGC------AGCCGGa-----GGCAgagCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 18602 | 0.66 | 0.774739 |
Target: 5'- -gGCGUUGUCGGCCacgCCGcagUgcacguacagcggCUCGGCa -3' miRNA: 3'- ugUGCAGCAGCCGGa--GGC---A-------------GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 79798 | 0.66 | 0.775642 |
Target: 5'- uACGCGUgCGUgGGCUUCUcg--CGGCGg -3' miRNA: 3'- -UGUGCA-GCAgCCGGAGGcagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 63898 | 0.66 | 0.775642 |
Target: 5'- cCGCGccugCGGUCUCgGUCUCGGUc -3' miRNA: 3'- uGUGCagcaGCCGGAGgCAGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 91975 | 0.66 | 0.738698 |
Target: 5'- gACACgGUCG-CGGCCgCCGcCgCGGCc -3' miRNA: 3'- -UGUG-CAGCaGCCGGaGGCaGaGCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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