miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 124987 0.66 0.729224
Target:  5'- -gACGgcgCGcCGGCCUCgGcCUCGGgGc -3'
miRNA:   3'- ugUGCa--GCaGCCGGAGgCaGAGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 131485 0.66 0.775642
Target:  5'- aGCGCGcCGUCGacGCCUUCuUC-CGGCa -3'
miRNA:   3'- -UGUGCaGCAGC--CGGAGGcAGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 12655 0.66 0.766565
Target:  5'- gGCGCGUggCGUUugcgaGGCCUCCcUCU-GGCGu -3'
miRNA:   3'- -UGUGCA--GCAG-----CCGGAGGcAGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 3012 0.66 0.729224
Target:  5'- gACGCGcUCGgccgUGGCCcucugcgCCGcCUCGGCc -3'
miRNA:   3'- -UGUGC-AGCa---GCCGGa------GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 12252 0.66 0.757376
Target:  5'- cCAUGUUG-CGGCCcCCGUCgcCGaGCGa -3'
miRNA:   3'- uGUGCAGCaGCCGGaGGCAGa-GC-CGC- -5'
23574 3' -59.9 NC_005261.1 + 44274 0.66 0.766565
Target:  5'- -gGCGUCGaCGGCCgaccgcCCGgaggCGGCGc -3'
miRNA:   3'- ugUGCAGCaGCCGGa-----GGCaga-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 69918 0.66 0.728272
Target:  5'- gGCACGUCGaagCGGCCgcagaggUCCG-CgcccgCGGCc -3'
miRNA:   3'- -UGUGCAGCa--GCCGG-------AGGCaGa----GCCGc -5'
23574 3' -59.9 NC_005261.1 + 6644 0.66 0.729224
Target:  5'- cGCGCG-CGUaGGCCUcggCCGUCgCGGgGg -3'
miRNA:   3'- -UGUGCaGCAgCCGGA---GGCAGaGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 19195 0.66 0.729224
Target:  5'- gGCGCGUuacCGUCGGCgacgUCCGcUCauucgUCGGCGc -3'
miRNA:   3'- -UGUGCA---GCAGCCGg---AGGC-AG-----AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 21705 0.66 0.775642
Target:  5'- gGCGCGgagCGgcgGGCCUCgCGcCgccgCGGCGg -3'
miRNA:   3'- -UGUGCa--GCag-CCGGAG-GCaGa---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 36209 0.66 0.757376
Target:  5'- -gACGuUCG-CGGCCUCgGg--CGGCGg -3'
miRNA:   3'- ugUGC-AGCaGCCGGAGgCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 63458 0.66 0.738698
Target:  5'- uGCGCG-CGUCGaCCUCCG-CgccugUGGCGc -3'
miRNA:   3'- -UGUGCaGCAGCcGGAGGCaGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 3196 0.66 0.729224
Target:  5'- cGCAgG-CGUCGGCCUcgCCGcCgCGGCc -3'
miRNA:   3'- -UGUgCaGCAGCCGGA--GGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 80255 0.66 0.748084
Target:  5'- gGCGCGgccgCG-CGcGCCUgCGUCgcCGGCGu -3'
miRNA:   3'- -UGUGCa---GCaGC-CGGAgGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 82056 0.66 0.751813
Target:  5'- cGCGCGUCGUCcuccccgcgGGCC-CCGccgcugccgccaccCUCGGCc -3'
miRNA:   3'- -UGUGCAGCAG---------CCGGaGGCa-------------GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 67843 0.66 0.757376
Target:  5'- gGCGCGUCGugcgugUCGGCCacggcgCCGUggaGGCGc -3'
miRNA:   3'- -UGUGCAGC------AGCCGGa-----GGCAgagCCGC- -5'
23574 3' -59.9 NC_005261.1 + 18602 0.66 0.774739
Target:  5'- -gGCGUUGUCGGCCacgCCGcagUgcacguacagcggCUCGGCa -3'
miRNA:   3'- ugUGCAGCAGCCGGa--GGC---A-------------GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 79798 0.66 0.775642
Target:  5'- uACGCGUgCGUgGGCUUCUcg--CGGCGg -3'
miRNA:   3'- -UGUGCA-GCAgCCGGAGGcagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 63898 0.66 0.775642
Target:  5'- cCGCGccugCGGUCUCgGUCUCGGUc -3'
miRNA:   3'- uGUGCagcaGCCGGAGgCAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 91975 0.66 0.738698
Target:  5'- gACACgGUCG-CGGCCgCCGcCgCGGCc -3'
miRNA:   3'- -UGUG-CAGCaGCCGGaGGCaGaGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.