Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 3012 | 0.66 | 0.729224 |
Target: 5'- gACGCGcUCGgccgUGGCCcucugcgCCGcCUCGGCc -3' miRNA: 3'- -UGUGC-AGCa---GCCGGa------GGCaGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 3196 | 0.66 | 0.729224 |
Target: 5'- cGCAgG-CGUCGGCCUcgCCGcCgCGGCc -3' miRNA: 3'- -UGUgCaGCAGCCGGA--GGCaGaGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 4704 | 0.67 | 0.71005 |
Target: 5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3' miRNA: 3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 5053 | 0.69 | 0.572412 |
Target: 5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3' miRNA: 3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 5338 | 0.67 | 0.671024 |
Target: 5'- gGCGCGg-GUCGGCCagCCGgcuggUCGGUGg -3' miRNA: 3'- -UGUGCagCAGCCGGa-GGCag---AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 6133 | 0.73 | 0.383055 |
Target: 5'- aGCGCGUCG-CGGCCgcccUCCG-CggcagCGGCGa -3' miRNA: 3'- -UGUGCAGCaGCCGG----AGGCaGa----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 6644 | 0.66 | 0.729224 |
Target: 5'- cGCGCG-CGUaGGCCUcggCCGUCgCGGgGg -3' miRNA: 3'- -UGUGCaGCAgCCGGA---GGCAGaGCCgC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 7893 | 0.68 | 0.641415 |
Target: 5'- aGCGCGUCcccgagcgCGGCCgggCCGUCcaUGGCGc -3' miRNA: 3'- -UGUGCAGca------GCCGGa--GGCAGa-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 10390 | 0.75 | 0.282108 |
Target: 5'- cGCGCGcUCGUCGGCUUCUuucugCUCGGCc -3' miRNA: 3'- -UGUGC-AGCAGCCGGAGGca---GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 12252 | 0.66 | 0.757376 |
Target: 5'- cCAUGUUG-CGGCCcCCGUCgcCGaGCGa -3' miRNA: 3'- uGUGCAGCaGCCGGaGGCAGa-GC-CGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 12655 | 0.66 | 0.766565 |
Target: 5'- gGCGCGUggCGUUugcgaGGCCUCCcUCU-GGCGu -3' miRNA: 3'- -UGUGCA--GCAG-----CCGGAGGcAGAgCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 12798 | 0.66 | 0.729224 |
Target: 5'- aGCuCGUCGUCGGCgucgcugCCGUcCUCcGCGa -3' miRNA: 3'- -UGuGCAGCAGCCGga-----GGCA-GAGcCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 13073 | 0.67 | 0.671024 |
Target: 5'- gGCGCGUcCGcCGGC--CCGUCggcgggCGGCGg -3' miRNA: 3'- -UGUGCA-GCaGCCGgaGGCAGa-----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 15291 | 0.69 | 0.562662 |
Target: 5'- cGCGCgGUCG-CGGCCUCCGggUCGuCGg -3' miRNA: 3'- -UGUG-CAGCaGCCGGAGGCagAGCcGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 16956 | 0.67 | 0.719672 |
Target: 5'- -aGCGaggcCGggCGGCCgccCCGUCUgCGGCGg -3' miRNA: 3'- ugUGCa---GCa-GCCGGa--GGCAGA-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 18602 | 0.66 | 0.774739 |
Target: 5'- -gGCGUUGUCGGCCacgCCGcagUgcacguacagcggCUCGGCa -3' miRNA: 3'- ugUGCAGCAGCCGGa--GGC---A-------------GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 19195 | 0.66 | 0.729224 |
Target: 5'- gGCGCGUuacCGUCGGCgacgUCCGcUCauucgUCGGCGc -3' miRNA: 3'- -UGUGCA---GCAGCCGg---AGGC-AG-----AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 19442 | 0.68 | 0.615697 |
Target: 5'- cACACGUCGUCGGggcCguugaggaagacguuCUCCGUCUUgacgucccgaugGGCGa -3' miRNA: 3'- -UGUGCAGCAGCC---G---------------GAGGCAGAG------------CCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 21705 | 0.66 | 0.775642 |
Target: 5'- gGCGCGgagCGgcgGGCCUCgCGcCgccgCGGCGg -3' miRNA: 3'- -UGUGCa--GCag-CCGGAG-GCaGa---GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 22215 | 0.69 | 0.552958 |
Target: 5'- uGCGCGcCGUCGGCggcucaggCCGcCUCgGGCGg -3' miRNA: 3'- -UGUGCaGCAGCCGga------GGCaGAG-CCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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