miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 3012 0.66 0.729224
Target:  5'- gACGCGcUCGgccgUGGCCcucugcgCCGcCUCGGCc -3'
miRNA:   3'- -UGUGC-AGCa---GCCGGa------GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 3196 0.66 0.729224
Target:  5'- cGCAgG-CGUCGGCCUcgCCGcCgCGGCc -3'
miRNA:   3'- -UGUgCaGCAGCCGGA--GGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 4704 0.67 0.71005
Target:  5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3'
miRNA:   3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 5053 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 5338 0.67 0.671024
Target:  5'- gGCGCGg-GUCGGCCagCCGgcuggUCGGUGg -3'
miRNA:   3'- -UGUGCagCAGCCGGa-GGCag---AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 6133 0.73 0.383055
Target:  5'- aGCGCGUCG-CGGCCgcccUCCG-CggcagCGGCGa -3'
miRNA:   3'- -UGUGCAGCaGCCGG----AGGCaGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 6644 0.66 0.729224
Target:  5'- cGCGCG-CGUaGGCCUcggCCGUCgCGGgGg -3'
miRNA:   3'- -UGUGCaGCAgCCGGA---GGCAGaGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 7893 0.68 0.641415
Target:  5'- aGCGCGUCcccgagcgCGGCCgggCCGUCcaUGGCGc -3'
miRNA:   3'- -UGUGCAGca------GCCGGa--GGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 10390 0.75 0.282108
Target:  5'- cGCGCGcUCGUCGGCUUCUuucugCUCGGCc -3'
miRNA:   3'- -UGUGC-AGCAGCCGGAGGca---GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 12252 0.66 0.757376
Target:  5'- cCAUGUUG-CGGCCcCCGUCgcCGaGCGa -3'
miRNA:   3'- uGUGCAGCaGCCGGaGGCAGa-GC-CGC- -5'
23574 3' -59.9 NC_005261.1 + 12655 0.66 0.766565
Target:  5'- gGCGCGUggCGUUugcgaGGCCUCCcUCU-GGCGu -3'
miRNA:   3'- -UGUGCA--GCAG-----CCGGAGGcAGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 12798 0.66 0.729224
Target:  5'- aGCuCGUCGUCGGCgucgcugCCGUcCUCcGCGa -3'
miRNA:   3'- -UGuGCAGCAGCCGga-----GGCA-GAGcCGC- -5'
23574 3' -59.9 NC_005261.1 + 13073 0.67 0.671024
Target:  5'- gGCGCGUcCGcCGGC--CCGUCggcgggCGGCGg -3'
miRNA:   3'- -UGUGCA-GCaGCCGgaGGCAGa-----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 15291 0.69 0.562662
Target:  5'- cGCGCgGUCG-CGGCCUCCGggUCGuCGg -3'
miRNA:   3'- -UGUG-CAGCaGCCGGAGGCagAGCcGC- -5'
23574 3' -59.9 NC_005261.1 + 16956 0.67 0.719672
Target:  5'- -aGCGaggcCGggCGGCCgccCCGUCUgCGGCGg -3'
miRNA:   3'- ugUGCa---GCa-GCCGGa--GGCAGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 18602 0.66 0.774739
Target:  5'- -gGCGUUGUCGGCCacgCCGcagUgcacguacagcggCUCGGCa -3'
miRNA:   3'- ugUGCAGCAGCCGGa--GGC---A-------------GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 19195 0.66 0.729224
Target:  5'- gGCGCGUuacCGUCGGCgacgUCCGcUCauucgUCGGCGc -3'
miRNA:   3'- -UGUGCA---GCAGCCGg---AGGC-AG-----AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 19442 0.68 0.615697
Target:  5'- cACACGUCGUCGGggcCguugaggaagacguuCUCCGUCUUgacgucccgaugGGCGa -3'
miRNA:   3'- -UGUGCAGCAGCC---G---------------GAGGCAGAG------------CCGC- -5'
23574 3' -59.9 NC_005261.1 + 21705 0.66 0.775642
Target:  5'- gGCGCGgagCGgcgGGCCUCgCGcCgccgCGGCGg -3'
miRNA:   3'- -UGUGCa--GCag-CCGGAG-GCaGa---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 22215 0.69 0.552958
Target:  5'- uGCGCGcCGUCGGCggcucaggCCGcCUCgGGCGg -3'
miRNA:   3'- -UGUGCaGCAGCCGga------GGCaGAG-CCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.