miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 7893 0.68 0.641415
Target:  5'- aGCGCGUCcccgagcgCGGCCgggCCGUCcaUGGCGc -3'
miRNA:   3'- -UGUGCAGca------GCCGGa--GGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 23859 0.7 0.543305
Target:  5'- aGCACGUacuucUCGGCCaCCGaCUCGGCc -3'
miRNA:   3'- -UGUGCAgc---AGCCGGaGGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 65461 0.7 0.543305
Target:  5'- gACGCGUgCG-CGGCCgCCGUgCUgGGCa -3'
miRNA:   3'- -UGUGCA-GCaGCCGGaGGCA-GAgCCGc -5'
23574 3' -59.9 NC_005261.1 + 22215 0.69 0.552958
Target:  5'- uGCGCGcCGUCGGCggcucaggCCGcCUCgGGCGg -3'
miRNA:   3'- -UGUGCaGCAGCCGga------GGCaGAG-CCGC- -5'
23574 3' -59.9 NC_005261.1 + 109571 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 38377 0.69 0.592023
Target:  5'- gGCGCG-CGgCGGCCggugCCG-CUgGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGa---GGCaGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 61354 0.69 0.597931
Target:  5'- -aGCGUgcCGUCGGCCUCC-UCgccgggcgccaggCGGCGc -3'
miRNA:   3'- ugUGCA--GCAGCCGGAGGcAGa------------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 102453 0.68 0.631522
Target:  5'- gGCGCccgCG--GGCCUCCuGUCUCGGCc -3'
miRNA:   3'- -UGUGca-GCagCCGGAGG-CAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 90543 0.68 0.641415
Target:  5'- gACGCGgcgccgCGggCGGCCgugCUGcgCUCGGCGc -3'
miRNA:   3'- -UGUGCa-----GCa-GCCGGa--GGCa-GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 61203 0.7 0.514699
Target:  5'- cGCGCG-CG-CGGCCUCgGcgUCGGCGa -3'
miRNA:   3'- -UGUGCaGCaGCCGGAGgCagAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 125254 0.7 0.505298
Target:  5'- -gGCGUCG-CGGCCcucgCUGUCUgGGUGu -3'
miRNA:   3'- ugUGCAGCaGCCGGa---GGCAGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 47447 0.7 0.505298
Target:  5'- aGCGCG-CGcCGGCCgCCGcagcggcCUCGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGaGGCa------GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 69632 0.74 0.299137
Target:  5'- cCACGcCGUCGGCCccgcucccgcggcCCGcCUCGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGa------------GGCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 70021 0.74 0.301826
Target:  5'- cGC-CGUUGUCGGCCgcgCCGg--CGGCGg -3'
miRNA:   3'- -UGuGCAGCAGCCGGa--GGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 101428 0.74 0.322589
Target:  5'- gGCACGUagCGcCGGCCggcgCaaaGUCUCGGCGc -3'
miRNA:   3'- -UGUGCA--GCaGCCGGa---Gg--CAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 33848 0.73 0.367252
Target:  5'- gGCGCGccUC-UCGGCCUCCGgC-CGGCGg -3'
miRNA:   3'- -UGUGC--AGcAGCCGGAGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 6133 0.73 0.383055
Target:  5'- aGCGCGUCG-CGGCCgcccUCCG-CggcagCGGCGa -3'
miRNA:   3'- -UGUGCAGCaGCCGG----AGGCaGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 27907 0.71 0.441793
Target:  5'- aGCGCGUCcgcggCGGCgCgguugCCGUaCUCGGCGg -3'
miRNA:   3'- -UGUGCAGca---GCCG-Ga----GGCA-GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 49673 0.71 0.450595
Target:  5'- gACGCGUCGcCGGCgCUCgGguaCUCGGUc -3'
miRNA:   3'- -UGUGCAGCaGCCG-GAGgCa--GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 35237 0.71 0.47756
Target:  5'- aGCGCGUgG-CGGCCgCCGUgUCGcGCGc -3'
miRNA:   3'- -UGUGCAgCaGCCGGaGGCAgAGC-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.