Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 7893 | 0.68 | 0.641415 |
Target: 5'- aGCGCGUCcccgagcgCGGCCgggCCGUCcaUGGCGc -3' miRNA: 3'- -UGUGCAGca------GCCGGa--GGCAGa-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 23859 | 0.7 | 0.543305 |
Target: 5'- aGCACGUacuucUCGGCCaCCGaCUCGGCc -3' miRNA: 3'- -UGUGCAgc---AGCCGGaGGCaGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 65461 | 0.7 | 0.543305 |
Target: 5'- gACGCGUgCG-CGGCCgCCGUgCUgGGCa -3' miRNA: 3'- -UGUGCA-GCaGCCGGaGGCA-GAgCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 22215 | 0.69 | 0.552958 |
Target: 5'- uGCGCGcCGUCGGCggcucaggCCGcCUCgGGCGg -3' miRNA: 3'- -UGUGCaGCAGCCGga------GGCaGAG-CCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 109571 | 0.69 | 0.572412 |
Target: 5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3' miRNA: 3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 38377 | 0.69 | 0.592023 |
Target: 5'- gGCGCG-CGgCGGCCggugCCG-CUgGGCGg -3' miRNA: 3'- -UGUGCaGCaGCCGGa---GGCaGAgCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 61354 | 0.69 | 0.597931 |
Target: 5'- -aGCGUgcCGUCGGCCUCC-UCgccgggcgccaggCGGCGc -3' miRNA: 3'- ugUGCA--GCAGCCGGAGGcAGa------------GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 102453 | 0.68 | 0.631522 |
Target: 5'- gGCGCccgCG--GGCCUCCuGUCUCGGCc -3' miRNA: 3'- -UGUGca-GCagCCGGAGG-CAGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 90543 | 0.68 | 0.641415 |
Target: 5'- gACGCGgcgccgCGggCGGCCgugCUGcgCUCGGCGc -3' miRNA: 3'- -UGUGCa-----GCa-GCCGGa--GGCa-GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 61203 | 0.7 | 0.514699 |
Target: 5'- cGCGCG-CG-CGGCCUCgGcgUCGGCGa -3' miRNA: 3'- -UGUGCaGCaGCCGGAGgCagAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 125254 | 0.7 | 0.505298 |
Target: 5'- -gGCGUCG-CGGCCcucgCUGUCUgGGUGu -3' miRNA: 3'- ugUGCAGCaGCCGGa---GGCAGAgCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 47447 | 0.7 | 0.505298 |
Target: 5'- aGCGCG-CGcCGGCCgCCGcagcggcCUCGGCGg -3' miRNA: 3'- -UGUGCaGCaGCCGGaGGCa------GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 69632 | 0.74 | 0.299137 |
Target: 5'- cCACGcCGUCGGCCccgcucccgcggcCCGcCUCGGCGg -3' miRNA: 3'- uGUGCaGCAGCCGGa------------GGCaGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 70021 | 0.74 | 0.301826 |
Target: 5'- cGC-CGUUGUCGGCCgcgCCGg--CGGCGg -3' miRNA: 3'- -UGuGCAGCAGCCGGa--GGCagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 101428 | 0.74 | 0.322589 |
Target: 5'- gGCACGUagCGcCGGCCggcgCaaaGUCUCGGCGc -3' miRNA: 3'- -UGUGCA--GCaGCCGGa---Gg--CAGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 33848 | 0.73 | 0.367252 |
Target: 5'- gGCGCGccUC-UCGGCCUCCGgC-CGGCGg -3' miRNA: 3'- -UGUGC--AGcAGCCGGAGGCaGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 6133 | 0.73 | 0.383055 |
Target: 5'- aGCGCGUCG-CGGCCgcccUCCG-CggcagCGGCGa -3' miRNA: 3'- -UGUGCAGCaGCCGG----AGGCaGa----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 27907 | 0.71 | 0.441793 |
Target: 5'- aGCGCGUCcgcggCGGCgCgguugCCGUaCUCGGCGg -3' miRNA: 3'- -UGUGCAGca---GCCG-Ga----GGCA-GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 49673 | 0.71 | 0.450595 |
Target: 5'- gACGCGUCGcCGGCgCUCgGguaCUCGGUc -3' miRNA: 3'- -UGUGCAGCaGCCG-GAGgCa--GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 35237 | 0.71 | 0.47756 |
Target: 5'- aGCGCGUgG-CGGCCgCCGUgUCGcGCGc -3' miRNA: 3'- -UGUGCAgCaGCCGGaGGCAgAGC-CGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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