miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 131485 0.66 0.775642
Target:  5'- aGCGCGcCGUCGacGCCUUCuUC-CGGCa -3'
miRNA:   3'- -UGUGCaGCAGC--CGGAGGcAGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 58376 0.66 0.748084
Target:  5'- -gGCGaCGUCGGCCUCCag---GGCGa -3'
miRNA:   3'- ugUGCaGCAGCCGGAGGcagagCCGC- -5'
23574 3' -59.9 NC_005261.1 + 80034 0.66 0.729224
Target:  5'- -gGCGUCGcCGucGCCgCCGUCgccacuggCGGCGg -3'
miRNA:   3'- ugUGCAGCaGC--CGGaGGCAGa-------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 115754 1 0.005694
Target:  5'- cACACGUCGUCGGCC-CCGUCUCGGCGg -3'
miRNA:   3'- -UGUGCAGCAGCCGGaGGCAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 48316 0.66 0.766565
Target:  5'- gGCGCGUCGggccCGGgCUCgGgggCgcgcgCGGCGa -3'
miRNA:   3'- -UGUGCAGCa---GCCgGAGgCa--Ga----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 118609 0.66 0.766565
Target:  5'- uCGCGcUGUCGGCCguugcccuggCCGcCgCGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGa---------GGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 81331 0.66 0.766565
Target:  5'- cGC-CGUCGUCGGgg-CCGUCggcggGGCGg -3'
miRNA:   3'- -UGuGCAGCAGCCggaGGCAGag---CCGC- -5'
23574 3' -59.9 NC_005261.1 + 43852 0.66 0.766565
Target:  5'- -gGCGagGacgCGGCCgcgUCGUCcUCGGCGg -3'
miRNA:   3'- ugUGCagCa--GCCGGa--GGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 96285 0.66 0.757376
Target:  5'- cGCugG-CG-CGGCUUCgGcCUCGGCc -3'
miRNA:   3'- -UGugCaGCaGCCGGAGgCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 118895 0.66 0.748084
Target:  5'- gGCGCGcUGgUGGCCUgCGUCUgggucCGGCGc -3'
miRNA:   3'- -UGUGCaGCaGCCGGAgGCAGA-----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 67307 0.66 0.757376
Target:  5'- cGCGCGccgcCGUCGGCCgccgCCGcgCUCaGCc -3'
miRNA:   3'- -UGUGCa---GCAGCCGGa---GGCa-GAGcCGc -5'
23574 3' -59.9 NC_005261.1 + 87948 0.66 0.757376
Target:  5'- cGCGCGcCGccaCGGCCcgCCGg--CGGCGg -3'
miRNA:   3'- -UGUGCaGCa--GCCGGa-GGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 120588 0.66 0.775642
Target:  5'- -aGCGUCGU-GGCCgucgccugCgGcCUCGGCGc -3'
miRNA:   3'- ugUGCAGCAgCCGGa-------GgCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 122608 0.66 0.748084
Target:  5'- cCGCGUUGUCGuGCCUgUG-CUugaaCGGCGa -3'
miRNA:   3'- uGUGCAGCAGC-CGGAgGCaGA----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121534 0.66 0.775642
Target:  5'- aGCuccuCGUCGcugUCGgaGCCgCCGUCcUCGGCGa -3'
miRNA:   3'- -UGu---GCAGC---AGC--CGGaGGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 75328 0.66 0.76382
Target:  5'- cGCGCGgagcccugugaccuUCGUCGGCCUCgUGgagcagCUgcCGGCGu -3'
miRNA:   3'- -UGUGC--------------AGCAGCCGGAG-GCa-----GA--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121234 0.66 0.748084
Target:  5'- cGCAUGgCGcCGGCCagcUCCGaCUCGGgGu -3'
miRNA:   3'- -UGUGCaGCaGCCGG---AGGCaGAGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 62102 0.66 0.738698
Target:  5'- uGCACGauggCGUUGGCCacgCCGUCcugcaGGCc -3'
miRNA:   3'- -UGUGCa---GCAGCCGGa--GGCAGag---CCGc -5'
23574 3' -59.9 NC_005261.1 + 34460 0.66 0.775642
Target:  5'- gGCACGggcCGggGGCC-CCGUaccugCGGCGg -3'
miRNA:   3'- -UGUGCa--GCagCCGGaGGCAga---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 101522 0.66 0.766565
Target:  5'- cGCccuCGUCG-CGGUCgcgcgCCGcCUCGGCc -3'
miRNA:   3'- -UGu--GCAGCaGCCGGa----GGCaGAGCCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.