Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 105221 | 0.67 | 0.719672 |
Target: 5'- cGCGCGggcCG-CGGCCgcggCCGugaUCUgCGGCGg -3' miRNA: 3'- -UGUGCa--GCaGCCGGa---GGC---AGA-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 80034 | 0.66 | 0.729224 |
Target: 5'- -gGCGUCGcCGucGCCgCCGUCgccacuggCGGCGg -3' miRNA: 3'- ugUGCAGCaGC--CGGaGGCAGa-------GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 87948 | 0.66 | 0.757376 |
Target: 5'- cGCGCGcCGccaCGGCCcgCCGg--CGGCGg -3' miRNA: 3'- -UGUGCaGCa--GCCGGa-GGCagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 34460 | 0.66 | 0.775642 |
Target: 5'- gGCACGggcCGggGGCC-CCGUaccugCGGCGg -3' miRNA: 3'- -UGUGCa--GCagCCGGaGGCAga---GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 35006 | 0.67 | 0.680845 |
Target: 5'- aACACcugCGgugCGGCCggCGUCUCGGUc -3' miRNA: 3'- -UGUGca-GCa--GCCGGagGCAGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 87387 | 0.67 | 0.700365 |
Target: 5'- -gAUGUCcUCGGCCgUCGUCUcgaCGGCGc -3' miRNA: 3'- ugUGCAGcAGCCGGaGGCAGA---GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 58376 | 0.66 | 0.748084 |
Target: 5'- -gGCGaCGUCGGCCUCCag---GGCGa -3' miRNA: 3'- ugUGCaGCAGCCGGAGGcagagCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 121534 | 0.66 | 0.775642 |
Target: 5'- aGCuccuCGUCGcugUCGgaGCCgCCGUCcUCGGCGa -3' miRNA: 3'- -UGu---GCAGC---AGC--CGGaGGCAG-AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 4704 | 0.67 | 0.71005 |
Target: 5'- uCGCGUCuuuggcaUCGGCC-CCGgagUCGGCGg -3' miRNA: 3'- uGUGCAGc------AGCCGGaGGCag-AGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 120588 | 0.66 | 0.775642 |
Target: 5'- -aGCGUCGU-GGCCgucgccugCgGcCUCGGCGc -3' miRNA: 3'- ugUGCAGCAgCCGGa-------GgCaGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 62102 | 0.66 | 0.738698 |
Target: 5'- uGCACGauggCGUUGGCCacgCCGUCcugcaGGCc -3' miRNA: 3'- -UGUGCa---GCAGCCGGa--GGCAGag---CCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 108582 | 0.67 | 0.713906 |
Target: 5'- cGCGCGaaggCGUUGGCCUCgcccacgggcaccagCGcCUCgGGCGg -3' miRNA: 3'- -UGUGCa---GCAGCCGGAG---------------GCaGAG-CCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 122608 | 0.66 | 0.748084 |
Target: 5'- cCGCGUUGUCGuGCCUgUG-CUugaaCGGCGa -3' miRNA: 3'- uGUGCAGCAGC-CGGAgGCaGA----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 96285 | 0.66 | 0.757376 |
Target: 5'- cGCugG-CG-CGGCUUCgGcCUCGGCc -3' miRNA: 3'- -UGugCaGCaGCCGGAGgCaGAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 81331 | 0.66 | 0.766565 |
Target: 5'- cGC-CGUCGUCGGgg-CCGUCggcggGGCGg -3' miRNA: 3'- -UGuGCAGCAGCCggaGGCAGag---CCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 48316 | 0.66 | 0.766565 |
Target: 5'- gGCGCGUCGggccCGGgCUCgGgggCgcgcgCGGCGa -3' miRNA: 3'- -UGUGCAGCa---GCCgGAGgCa--Ga----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 99762 | 0.67 | 0.669056 |
Target: 5'- aGCACGUCGgacggggagaggCGGCCcgggUCCcaGUCgCGGCGc -3' miRNA: 3'- -UGUGCAGCa-----------GCCGG----AGG--CAGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 48751 | 0.67 | 0.674956 |
Target: 5'- uGCGCGUaGUCGcGCCccCCGggcggcccgacgagCUCGGCGa -3' miRNA: 3'- -UGUGCAgCAGC-CGGa-GGCa-------------GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 44022 | 0.67 | 0.690628 |
Target: 5'- gGCGCGgCGggCGGCCgCCG-CgCGGCGg -3' miRNA: 3'- -UGUGCaGCa-GCCGGaGGCaGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 67505 | 0.67 | 0.700365 |
Target: 5'- cGCGCGUaGUaGGCCagCGUCgccgCGGCGc -3' miRNA: 3'- -UGUGCAgCAgCCGGagGCAGa---GCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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