miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 99762 0.67 0.669056
Target:  5'- aGCACGUCGgacggggagaggCGGCCcgggUCCcaGUCgCGGCGc -3'
miRNA:   3'- -UGUGCAGCa-----------GCCGG----AGG--CAGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 105221 0.67 0.719672
Target:  5'- cGCGCGggcCG-CGGCCgcggCCGugaUCUgCGGCGg -3'
miRNA:   3'- -UGUGCa--GCaGCCGGa---GGC---AGA-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 81331 0.66 0.766565
Target:  5'- cGC-CGUCGUCGGgg-CCGUCggcggGGCGg -3'
miRNA:   3'- -UGuGCAGCAGCCggaGGCAGag---CCGC- -5'
23574 3' -59.9 NC_005261.1 + 5338 0.67 0.671024
Target:  5'- gGCGCGg-GUCGGCCagCCGgcuggUCGGUGg -3'
miRNA:   3'- -UGUGCagCAGCCGGa-GGCag---AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 101522 0.66 0.766565
Target:  5'- cGCccuCGUCG-CGGUCgcgcgCCGcCUCGGCc -3'
miRNA:   3'- -UGu--GCAGCaGCCGGa----GGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 47715 0.71 0.450595
Target:  5'- -gGCGUCGggGGCCUCC---UCGGCGg -3'
miRNA:   3'- ugUGCAGCagCCGGAGGcagAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 75328 0.66 0.76382
Target:  5'- cGCGCGgagcccugugaccuUCGUCGGCCUCgUGgagcagCUgcCGGCGu -3'
miRNA:   3'- -UGUGC--------------AGCAGCCGGAG-GCa-----GA--GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 101423 0.71 0.47756
Target:  5'- uCACGaCGUCGGCCgCCGaggCGGCGc -3'
miRNA:   3'- uGUGCaGCAGCCGGaGGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 106942 0.71 0.486725
Target:  5'- gACACG-CGcaccUCGGCCcgggcgcgcUCCGcCUCGGCGc -3'
miRNA:   3'- -UGUGCaGC----AGCCGG---------AGGCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 124865 0.7 0.533707
Target:  5'- -gGCGUCGUC-GCCUUCGUCgucUGGCc -3'
miRNA:   3'- ugUGCAGCAGcCGGAGGCAGa--GCCGc -5'
23574 3' -59.9 NC_005261.1 + 5053 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 129857 0.68 0.610757
Target:  5'- cCGCGaCGUCGGCCaUCaCGauguugcUCUCGGCc -3'
miRNA:   3'- uGUGCaGCAGCCGG-AG-GC-------AGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 51117 0.68 0.651302
Target:  5'- -gACGUCG-CGGCCgCUGUgaucaUUCGGCGc -3'
miRNA:   3'- ugUGCAGCaGCCGGaGGCA-----GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 35006 0.67 0.680845
Target:  5'- aACACcugCGgugCGGCCggCGUCUCGGUc -3'
miRNA:   3'- -UGUGca-GCa--GCCGGagGCAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 44022 0.67 0.690628
Target:  5'- gGCGCGgCGggCGGCCgCCG-CgCGGCGg -3'
miRNA:   3'- -UGUGCaGCa-GCCGGaGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 87387 0.67 0.700365
Target:  5'- -gAUGUCcUCGGCCgUCGUCUcgaCGGCGc -3'
miRNA:   3'- ugUGCAGcAGCCGGaGGCAGA---GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 107533 0.67 0.713906
Target:  5'- aGCGCGUCGgCGGCCaccagCaCGUCcgagagcacggcagCGGCGa -3'
miRNA:   3'- -UGUGCAGCaGCCGGa----G-GCAGa-------------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 80034 0.66 0.729224
Target:  5'- -gGCGUCGcCGucGCCgCCGUCgccacuggCGGCGg -3'
miRNA:   3'- ugUGCAGCaGC--CGGaGGCAGa-------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 118895 0.66 0.748084
Target:  5'- gGCGCGcUGgUGGCCUgCGUCUgggucCGGCGc -3'
miRNA:   3'- -UGUGCaGCaGCCGGAgGCAGA-----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 94613 0.66 0.757376
Target:  5'- cGCGCGcccUCGcCGccGCCggcgCCGUCgUCGGCGc -3'
miRNA:   3'- -UGUGC---AGCaGC--CGGa---GGCAG-AGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.