miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 48751 0.67 0.674956
Target:  5'- uGCGCGUaGUCGcGCCccCCGggcggcccgacgagCUCGGCGa -3'
miRNA:   3'- -UGUGCAgCAGC-CGGa-GGCa-------------GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 48828 0.67 0.700365
Target:  5'- gACGcCGUCGUCGGCC-CCGcCgcCGcGCa -3'
miRNA:   3'- -UGU-GCAGCAGCCGGaGGCaGa-GC-CGc -5'
23574 3' -59.9 NC_005261.1 + 49030 0.67 0.671024
Target:  5'- cCACG-CGUCGGCCUCgGcgcccgCgagCGGCu -3'
miRNA:   3'- uGUGCaGCAGCCGGAGgCa-----Ga--GCCGc -5'
23574 3' -59.9 NC_005261.1 + 49235 0.7 0.533707
Target:  5'- cGCGCGcagGUCGGCCgCCGcCgCGGCGg -3'
miRNA:   3'- -UGUGCag-CAGCCGGaGGCaGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 49673 0.71 0.450595
Target:  5'- gACGCGUCGcCGGCgCUCgGguaCUCGGUc -3'
miRNA:   3'- -UGUGCAGCaGCCG-GAGgCa--GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 51117 0.68 0.651302
Target:  5'- -gACGUCG-CGGCCgCUGUgaucaUUCGGCGc -3'
miRNA:   3'- ugUGCAGCaGCCGGaGGCA-----GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 53148 0.73 0.35952
Target:  5'- cGCGCGcCGUCGcGCCgCCGUCgUCGGgGu -3'
miRNA:   3'- -UGUGCaGCAGC-CGGaGGCAG-AGCCgC- -5'
23574 3' -59.9 NC_005261.1 + 55587 0.67 0.684763
Target:  5'- cGCGCGUgcuacgaccaccacaUGUCGGCCUCgcUGaUC-CGGCGg -3'
miRNA:   3'- -UGUGCA---------------GCAGCCGGAG--GC-AGaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 58376 0.66 0.748084
Target:  5'- -gGCGaCGUCGGCCUCCag---GGCGa -3'
miRNA:   3'- ugUGCaGCAGCCGGAGGcagagCCGC- -5'
23574 3' -59.9 NC_005261.1 + 58977 0.71 0.441793
Target:  5'- cCGCGUCGaaGGCCUCCacgggCGGCGg -3'
miRNA:   3'- uGUGCAGCagCCGGAGGcaga-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 59859 0.71 0.47756
Target:  5'- uGCGCGggaCGUCGGCCUCguaCGggugC-CGGCGg -3'
miRNA:   3'- -UGUGCa--GCAGCCGGAG---GCa---GaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 61203 0.7 0.514699
Target:  5'- cGCGCG-CG-CGGCCUCgGcgUCGGCGa -3'
miRNA:   3'- -UGUGCaGCaGCCGGAGgCagAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 61354 0.69 0.597931
Target:  5'- -aGCGUgcCGUCGGCCUCC-UCgccgggcgccaggCGGCGc -3'
miRNA:   3'- ugUGCA--GCAGCCGGAGGcAGa------------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 62102 0.66 0.738698
Target:  5'- uGCACGauggCGUUGGCCacgCCGUCcugcaGGCc -3'
miRNA:   3'- -UGUGCa---GCAGCCGGa--GGCAGag---CCGc -5'
23574 3' -59.9 NC_005261.1 + 63407 0.69 0.582201
Target:  5'- aACAUgagGUCGUCGGCgUCCGaCUCGcCGu -3'
miRNA:   3'- -UGUG---CAGCAGCCGgAGGCaGAGCcGC- -5'
23574 3' -59.9 NC_005261.1 + 63458 0.66 0.738698
Target:  5'- uGCGCG-CGUCGaCCUCCG-CgccugUGGCGc -3'
miRNA:   3'- -UGUGCaGCAGCcGGAGGCaGa----GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 63898 0.66 0.775642
Target:  5'- cCGCGccugCGGUCUCgGUCUCGGUc -3'
miRNA:   3'- uGUGCagcaGCCGGAGgCAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 65461 0.7 0.543305
Target:  5'- gACGCGUgCG-CGGCCgCCGUgCUgGGCa -3'
miRNA:   3'- -UGUGCA-GCaGCCGGaGGCA-GAgCCGc -5'
23574 3' -59.9 NC_005261.1 + 66188 0.68 0.611745
Target:  5'- gGCACGUCc---GCCUCCGagUCGGCc -3'
miRNA:   3'- -UGUGCAGcagcCGGAGGCagAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 67307 0.66 0.757376
Target:  5'- cGCGCGccgcCGUCGGCCgccgCCGcgCUCaGCc -3'
miRNA:   3'- -UGUGCa---GCAGCCGGa---GGCa-GAGcCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.