miRNA display CGI


Results 41 - 60 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23574 3' -59.9 NC_005261.1 + 114907 0.75 0.282108
Target:  5'- cGCGCGcUCGUCGGCUUCUuucugCUCGGCc -3'
miRNA:   3'- -UGUGC-AGCAGCCGGAGGca---GAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 23859 0.7 0.543305
Target:  5'- aGCACGUacuucUCGGCCaCCGaCUCGGCc -3'
miRNA:   3'- -UGUGCAgc---AGCCGGaGGCaGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 65461 0.7 0.543305
Target:  5'- gACGCGUgCG-CGGCCgCCGUgCUgGGCa -3'
miRNA:   3'- -UGUGCA-GCaGCCGGaGGCA-GAgCCGc -5'
23574 3' -59.9 NC_005261.1 + 22215 0.69 0.552958
Target:  5'- uGCGCGcCGUCGGCggcucaggCCGcCUCgGGCGg -3'
miRNA:   3'- -UGUGCaGCAGCCGga------GGCaGAG-CCGC- -5'
23574 3' -59.9 NC_005261.1 + 49030 0.67 0.671024
Target:  5'- cCACG-CGUCGGCCUCgGcgcccgCgagCGGCu -3'
miRNA:   3'- uGUGCaGCAGCCGGAGgCa-----Ga--GCCGc -5'
23574 3' -59.9 NC_005261.1 + 93985 0.68 0.661174
Target:  5'- cCGCGgCGUCGGCCgCgCG-CUgGGCGg -3'
miRNA:   3'- uGUGCaGCAGCCGGaG-GCaGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 70581 0.68 0.661174
Target:  5'- cGCGCG-CGgacgggCGGCC-CgCGuUCUCGGCGu -3'
miRNA:   3'- -UGUGCaGCa-----GCCGGaG-GC-AGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 68888 0.68 0.651302
Target:  5'- cCGCGUCGUCGccGUCUCCGUCgcugUCGcCGu -3'
miRNA:   3'- uGUGCAGCAGC--CGGAGGCAG----AGCcGC- -5'
23574 3' -59.9 NC_005261.1 + 39451 0.68 0.651302
Target:  5'- cGCACG-CG-CGGCCggcggCCGg--CGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGa----GGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 92005 0.68 0.651302
Target:  5'- gACGCGcUCGUccacgCGGCCUUCGag-CGGCGc -3'
miRNA:   3'- -UGUGC-AGCA-----GCCGGAGGCagaGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 7893 0.68 0.641415
Target:  5'- aGCGCGUCcccgagcgCGGCCgggCCGUCcaUGGCGc -3'
miRNA:   3'- -UGUGCAGca------GCCGGa--GGCAGa-GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 109571 0.69 0.572412
Target:  5'- uCGuCGUCGUCGGCC-CCG-C-CGGCc -3'
miRNA:   3'- uGU-GCAGCAGCCGGaGGCaGaGCCGc -5'
23574 3' -59.9 NC_005261.1 + 38377 0.69 0.592023
Target:  5'- gGCGCG-CGgCGGCCggugCCG-CUgGGCGg -3'
miRNA:   3'- -UGUGCaGCaGCCGGa---GGCaGAgCCGC- -5'
23574 3' -59.9 NC_005261.1 + 61354 0.69 0.597931
Target:  5'- -aGCGUgcCGUCGGCCUCC-UCgccgggcgccaggCGGCGc -3'
miRNA:   3'- ugUGCA--GCAGCCGGAGGcAGa------------GCCGC- -5'
23574 3' -59.9 NC_005261.1 + 102453 0.68 0.631522
Target:  5'- gGCGCccgCG--GGCCUCCuGUCUCGGCc -3'
miRNA:   3'- -UGUGca-GCagCCGGAGG-CAGAGCCGc -5'
23574 3' -59.9 NC_005261.1 + 90543 0.68 0.641415
Target:  5'- gACGCGgcgccgCGggCGGCCgugCUGcgCUCGGCGc -3'
miRNA:   3'- -UGUGCa-----GCa-GCCGGa--GGCa-GAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 115754 1 0.005694
Target:  5'- cACACGUCGUCGGCC-CCGUCUCGGCGg -3'
miRNA:   3'- -UGUGCAGCAGCCGGaGGCAGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 120588 0.66 0.775642
Target:  5'- -aGCGUCGU-GGCCgucgccugCgGcCUCGGCGc -3'
miRNA:   3'- ugUGCAGCAgCCGGa-------GgCaGAGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 121534 0.66 0.775642
Target:  5'- aGCuccuCGUCGcugUCGgaGCCgCCGUCcUCGGCGa -3'
miRNA:   3'- -UGu---GCAGC---AGC--CGGaGGCAG-AGCCGC- -5'
23574 3' -59.9 NC_005261.1 + 34460 0.66 0.775642
Target:  5'- gGCACGggcCGggGGCC-CCGUaccugCGGCGg -3'
miRNA:   3'- -UGUGCa--GCagCCGGaGGCAga---GCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.