Results 1 - 20 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23574 | 3' | -59.9 | NC_005261.1 | + | 115754 | 1 | 0.005694 |
Target: 5'- cACACGUCGUCGGCC-CCGUCUCGGCGg -3' miRNA: 3'- -UGUGCAGCAGCCGGaGGCAGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 108456 | 0.79 | 0.148143 |
Target: 5'- aGCGCGUCGUCGGCgaggauCUCCGcgUCGGCGc -3' miRNA: 3'- -UGUGCAGCAGCCG------GAGGCagAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 107156 | 0.76 | 0.257425 |
Target: 5'- cCAUGgaggCGgccaGcGCCUCCGUCUCGGCGg -3' miRNA: 3'- uGUGCa---GCag--C-CGGAGGCAGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 10390 | 0.75 | 0.282108 |
Target: 5'- cGCGCGcUCGUCGGCUUCUuucugCUCGGCc -3' miRNA: 3'- -UGUGC-AGCAGCCGGAGGca---GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 114907 | 0.75 | 0.282108 |
Target: 5'- cGCGCGcUCGUCGGCUUCUuucugCUCGGCc -3' miRNA: 3'- -UGUGC-AGCAGCCGGAGGca---GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 69632 | 0.74 | 0.299137 |
Target: 5'- cCACGcCGUCGGCCccgcucccgcggcCCGcCUCGGCGg -3' miRNA: 3'- uGUGCaGCAGCCGGa------------GGCaGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 70021 | 0.74 | 0.301826 |
Target: 5'- cGC-CGUUGUCGGCCgcgCCGg--CGGCGg -3' miRNA: 3'- -UGuGCAGCAGCCGGa--GGCagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 101428 | 0.74 | 0.322589 |
Target: 5'- gGCACGUagCGcCGGCCggcgCaaaGUCUCGGCGc -3' miRNA: 3'- -UGUGCA--GCaGCCGGa---Gg--CAGAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 92222 | 0.74 | 0.329743 |
Target: 5'- -gGCGUCGUCGGCC-CCGcCgagCGcGCGg -3' miRNA: 3'- ugUGCAGCAGCCGGaGGCaGa--GC-CGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 81432 | 0.73 | 0.3444 |
Target: 5'- -gGCGUCGUCGGCCgCCccg-CGGCGg -3' miRNA: 3'- ugUGCAGCAGCCGGaGGcagaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 53148 | 0.73 | 0.35952 |
Target: 5'- cGCGCGcCGUCGcGCCgCCGUCgUCGGgGu -3' miRNA: 3'- -UGUGCaGCAGC-CGGaGGCAG-AGCCgC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 93720 | 0.73 | 0.36492 |
Target: 5'- uCGuCGUCGUCGGCggcggcagcgcgcgCUUCGUaCUCGGCGg -3' miRNA: 3'- uGU-GCAGCAGCCG--------------GAGGCA-GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 33848 | 0.73 | 0.367252 |
Target: 5'- gGCGCGccUC-UCGGCCUCCGgC-CGGCGg -3' miRNA: 3'- -UGUGC--AGcAGCCGGAGGCaGaGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 6133 | 0.73 | 0.383055 |
Target: 5'- aGCGCGUCG-CGGCCgcccUCCG-CggcagCGGCGa -3' miRNA: 3'- -UGUGCAGCaGCCGG----AGGCaGa----GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 85540 | 0.72 | 0.415987 |
Target: 5'- cGCGCG-CGggCGG-CUCCGUCUgCGGCGc -3' miRNA: 3'- -UGUGCaGCa-GCCgGAGGCAGA-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 106101 | 0.72 | 0.424487 |
Target: 5'- uCGCGaCGUCGGCCggCGUCgcCGGCGc -3' miRNA: 3'- uGUGCaGCAGCCGGagGCAGa-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 27907 | 0.71 | 0.441793 |
Target: 5'- aGCGCGUCcgcggCGGCgCgguugCCGUaCUCGGCGg -3' miRNA: 3'- -UGUGCAGca---GCCG-Ga----GGCA-GAGCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 58977 | 0.71 | 0.441793 |
Target: 5'- cCGCGUCGaaGGCCUCCacgggCGGCGg -3' miRNA: 3'- uGUGCAGCagCCGGAGGcaga-GCCGC- -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 49673 | 0.71 | 0.450595 |
Target: 5'- gACGCGUCGcCGGCgCUCgGguaCUCGGUc -3' miRNA: 3'- -UGUGCAGCaGCCG-GAGgCa--GAGCCGc -5' |
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23574 | 3' | -59.9 | NC_005261.1 | + | 47715 | 0.71 | 0.450595 |
Target: 5'- -gGCGUCGggGGCCUCC---UCGGCGg -3' miRNA: 3'- ugUGCAGCagCCGGAGGcagAGCCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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