miRNA display CGI


Results 81 - 100 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 81497 0.67 0.70747
Target:  5'- cGCGgcuagCGCGGCGCGcgCGccgCCGCc -3'
miRNA:   3'- aCGCag---GCGCCGCGCuaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 63737 0.67 0.70747
Target:  5'- gUGCGcauggCCGCGGCGgCGuaggccgcCGUGUagcCCACg -3'
miRNA:   3'- -ACGCa----GGCGCCGC-GCua------GCACA---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 31617 0.67 0.69765
Target:  5'- cGCGgcUCCGCGGCGUcugGGaCGagGUCCAg -3'
miRNA:   3'- aCGC--AGGCGCCGCG---CUaGCa-CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 20106 0.67 0.69765
Target:  5'- gGCuUCCGCGGCaagGCGcgCGgGcCCGCa -3'
miRNA:   3'- aCGcAGGCGCCG---CGCuaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 103480 0.67 0.69765
Target:  5'- gGCGUCCaGCuGGCGCaagacGUCGUcGgcgCCGCg -3'
miRNA:   3'- aCGCAGG-CG-CCGCGc----UAGCA-Ca--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 133645 0.67 0.69765
Target:  5'- cGCG-CCGCuGCGCGAgcgcugCGUGcUCGCc -3'
miRNA:   3'- aCGCaGGCGcCGCGCUa-----GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 42850 0.67 0.69765
Target:  5'- gGCaGagUGCGaGCGCG-UCGUGUCCGa -3'
miRNA:   3'- aCG-CagGCGC-CGCGCuAGCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 16053 0.67 0.69765
Target:  5'- gGCGUgaCG-GGCGCcAUCGUGgCCGCg -3'
miRNA:   3'- aCGCAg-GCgCCGCGcUAGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 132350 0.67 0.687778
Target:  5'- aUGCGcagcuuccgCCGCGGCGCGcUCG---CCGCg -3'
miRNA:   3'- -ACGCa--------GGCGCCGCGCuAGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 105853 0.67 0.687778
Target:  5'- cGCGUCCGCccggucGGCgauGCGGUUGggcagGUgCACg -3'
miRNA:   3'- aCGCAGGCG------CCG---CGCUAGCa----CAgGUG- -5'
23575 3' -59.6 NC_005261.1 + 122744 0.67 0.687778
Target:  5'- -cCGcCCGCaGCaGCGGcgCGUGUCCGCc -3'
miRNA:   3'- acGCaGGCGcCG-CGCUa-GCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 89151 0.67 0.687778
Target:  5'- aGCGggcCCGCGGCGCG----UGcCCGCu -3'
miRNA:   3'- aCGCa--GGCGCCGCGCuagcACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 129355 0.67 0.687778
Target:  5'- aGCGcccccuUCCGCGcgcgggucGCGCGGcuUCGgGUCCACc -3'
miRNA:   3'- aCGC------AGGCGC--------CGCGCU--AGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 82362 0.67 0.687778
Target:  5'- gGCGUCgGCGcGCGCGcgCGccgCCAg -3'
miRNA:   3'- aCGCAGgCGC-CGCGCuaGCacaGGUg -5'
23575 3' -59.6 NC_005261.1 + 123520 0.67 0.681832
Target:  5'- cGCGUCCGCuagcaagcuguaccGCGCGAgCGUGcCCucGCg -3'
miRNA:   3'- aCGCAGGCGc-------------CGCGCUaGCACaGG--UG- -5'
23575 3' -59.6 NC_005261.1 + 53027 0.67 0.681832
Target:  5'- aGCGcuUCCGCGGCGCcggggcagccgucggGAgggcaGUGcUCCACc -3'
miRNA:   3'- aCGC--AGGCGCCGCG---------------CUag---CAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 69348 0.67 0.681832
Target:  5'- gGCGUCCGCgcagcgcacgacGGCGCacagccgcggcagagGGUCGUccCCGCg -3'
miRNA:   3'- aCGCAGGCG------------CCGCG---------------CUAGCAcaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 18684 0.67 0.677861
Target:  5'- uUGCGgccCCGCGGCGgGGccuugcUCGg--CCGCg -3'
miRNA:   3'- -ACGCa--GGCGCCGCgCU------AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 108080 0.67 0.677861
Target:  5'- cGCGgcgCCGCuaaGGCGCGcgCGc-UCCACc -3'
miRNA:   3'- aCGCa--GGCG---CCGCGCuaGCacAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 41107 0.67 0.677861
Target:  5'- aGCGUggCCGCGGCGCcucCGg--CCGCg -3'
miRNA:   3'- aCGCA--GGCGCCGCGcuaGCacaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.