miRNA display CGI


Results 61 - 80 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 136300 0.66 0.726918
Target:  5'- cGCGgugcugcCCGCGGCGCa---GUGcgCCGCg -3'
miRNA:   3'- aCGCa------GGCGCCGCGcuagCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 29490 0.66 0.726918
Target:  5'- cGCGgacgCCGCGGCGCcgcCGcugGcCCGCg -3'
miRNA:   3'- aCGCa---GGCGCCGCGcuaGCa--CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136506 0.66 0.726918
Target:  5'- cGCGcaCCGCGGUGCc--CGUGccgCCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGcuaGCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 98755 0.66 0.726918
Target:  5'- -uCGUCCGCGGCGgGccCGuUGgggcgCCGCg -3'
miRNA:   3'- acGCAGGCGCCGCgCuaGC-ACa----GGUG- -5'
23575 3' -59.6 NC_005261.1 + 38368 0.66 0.726918
Target:  5'- aGCGgCgGCGGCGCGcggCGgccgGUgCCGCu -3'
miRNA:   3'- aCGCaGgCGCCGCGCua-GCa---CA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 88648 0.66 0.726918
Target:  5'- aGCG-CCGCGcGCccCGAgccCGUGUUCACg -3'
miRNA:   3'- aCGCaGGCGC-CGc-GCUa--GCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 69076 0.66 0.717229
Target:  5'- gGCG-CgGCGGCGCGGUgCGgguaGUUgGCg -3'
miRNA:   3'- aCGCaGgCGCCGCGCUA-GCa---CAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 52662 0.66 0.717229
Target:  5'- cGCGgUCGCGGCGCcGAaccUCGcGgcgCCGCa -3'
miRNA:   3'- aCGCaGGCGCCGCG-CU---AGCaCa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 53108 0.66 0.717229
Target:  5'- aGCG-CCGCGGCGCug-CGcG-CCGCc -3'
miRNA:   3'- aCGCaGGCGCCGCGcuaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121076 0.66 0.717229
Target:  5'- cGCG-CCGCGG-GUGA-CG-GUCUACg -3'
miRNA:   3'- aCGCaGGCGCCgCGCUaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121638 0.66 0.717229
Target:  5'- gGCGgccgccgCCgGCGaGCGCGggC-UGUCCGCg -3'
miRNA:   3'- aCGCa------GG-CGC-CGCGCuaGcACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 100513 0.66 0.717229
Target:  5'- gGCGUCCagguagccgcGCGGCGCcaGcgCGUcgaucuccgaGUCCGCc -3'
miRNA:   3'- aCGCAGG----------CGCCGCG--CuaGCA----------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 7441 0.67 0.70747
Target:  5'- cGuCGUCCGCGGUGCGGccagCGcgGggcgCCAg -3'
miRNA:   3'- aC-GCAGGCGCCGCGCUa---GCa-Ca---GGUg -5'
23575 3' -59.6 NC_005261.1 + 125919 0.67 0.70747
Target:  5'- cGCGcCCGcCGGCuacGCGccCGUGcCCGCg -3'
miRNA:   3'- aCGCaGGC-GCCG---CGCuaGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 78853 0.67 0.70747
Target:  5'- gGCG-CCGUGGCGCGggCGcUGgcgggCgACa -3'
miRNA:   3'- aCGCaGGCGCCGCGCuaGC-ACa----GgUG- -5'
23575 3' -59.6 NC_005261.1 + 47500 0.67 0.70747
Target:  5'- aGCGcCucaggCGCGGCccaGCGGUCGUGUauauaccgCCGCg -3'
miRNA:   3'- aCGCaG-----GCGCCG---CGCUAGCACA--------GGUG- -5'
23575 3' -59.6 NC_005261.1 + 22783 0.67 0.70747
Target:  5'- gGCGgaggaguccggCCGCGaGCGCGAgcUCGgg-CCGCg -3'
miRNA:   3'- aCGCa----------GGCGC-CGCGCU--AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 36608 0.67 0.70747
Target:  5'- cGCGgCCGCGGCGCGAgaggCGcuagaggCgGCa -3'
miRNA:   3'- aCGCaGGCGCCGCGCUa---GCaca----GgUG- -5'
23575 3' -59.6 NC_005261.1 + 99702 0.67 0.70747
Target:  5'- cGCGccagcUCCGCcacGGuCGCGcgCGUGgCCGCg -3'
miRNA:   3'- aCGC-----AGGCG---CC-GCGCuaGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 95904 0.67 0.70747
Target:  5'- cGCGcCCgcGCGGCGCGcucacUCGcgGUCCGa -3'
miRNA:   3'- aCGCaGG--CGCCGCGCu----AGCa-CAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.