miRNA display CGI


Results 41 - 60 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 79807 0.66 0.740349
Target:  5'- gGCGUCCcccaacaugcgcgcgGCGGCGCGG-CGg--CCAg -3'
miRNA:   3'- aCGCAGG---------------CGCCGCGCUaGCacaGGUg -5'
23575 3' -59.6 NC_005261.1 + 61171 0.66 0.736529
Target:  5'- cGCGgcaCCGgccaGGCGCGGUCGccgagGgCCGCg -3'
miRNA:   3'- aCGCa--GGCg---CCGCGCUAGCa----CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 398 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 91127 0.66 0.736529
Target:  5'- cGCG-CCGCGGC-CGAggccucagcCGUG-CCGCc -3'
miRNA:   3'- aCGCaGGCGCCGcGCUa--------GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 657 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 67661 0.66 0.736529
Target:  5'- -cCGUCCGCgcgcggcgccaGGCGCGGUgagcgCGUcaagaaGUCCACg -3'
miRNA:   3'- acGCAGGCG-----------CCGCGCUA-----GCA------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 138069 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 90293 0.66 0.736529
Target:  5'- cGCGcucgCgCGCGGCGCGcgggaCGUGacggCCGCg -3'
miRNA:   3'- aCGCa---G-GCGCCGCGCua---GCACa---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 105174 0.66 0.736529
Target:  5'- cGCGUCCcCGGCGCcgaGUCcUGgcccUCCGCg -3'
miRNA:   3'- aCGCAGGcGCCGCGc--UAGcAC----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 104915 0.66 0.736529
Target:  5'- gGCGgCgGCGGCaGCGGUCcugGUCCcGCg -3'
miRNA:   3'- aCGCaGgCGCCG-CGCUAGca-CAGG-UG- -5'
23575 3' -59.6 NC_005261.1 + 12210 0.66 0.736529
Target:  5'- cGCGgccgCGCGGCGCGAUCaa--CUACg -3'
miRNA:   3'- aCGCag--GCGCCGCGCUAGcacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 90434 0.66 0.736529
Target:  5'- gGCG-CUGCGcGCGCGgAUCGggcccuUCCGCu -3'
miRNA:   3'- aCGCaGGCGC-CGCGC-UAGCac----AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 102650 0.66 0.730772
Target:  5'- cGCGgcccgcagcaccuccUCCGCGGCGCccagCGccgcGUCCGCc -3'
miRNA:   3'- aCGC---------------AGGCGCCGCGcua-GCa---CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 95206 0.66 0.726918
Target:  5'- cGCG-CCGCccgcccGCGCGGUgCGUGUuCCAg -3'
miRNA:   3'- aCGCaGGCGc-----CGCGCUA-GCACA-GGUg -5'
23575 3' -59.6 NC_005261.1 + 98755 0.66 0.726918
Target:  5'- -uCGUCCGCGGCGgGccCGuUGgggcgCCGCg -3'
miRNA:   3'- acGCAGGCGCCGCgCuaGC-ACa----GGUG- -5'
23575 3' -59.6 NC_005261.1 + 136506 0.66 0.726918
Target:  5'- cGCGcaCCGCGGUGCc--CGUGccgCCGCg -3'
miRNA:   3'- aCGCa-GGCGCCGCGcuaGCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 29490 0.66 0.726918
Target:  5'- cGCGgacgCCGCGGCGCcgcCGcugGcCCGCg -3'
miRNA:   3'- aCGCa---GGCGCCGCGcuaGCa--CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 136300 0.66 0.726918
Target:  5'- cGCGgugcugcCCGCGGCGCa---GUGcgCCGCg -3'
miRNA:   3'- aCGCa------GGCGCCGCGcuagCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 38368 0.66 0.726918
Target:  5'- aGCGgCgGCGGCGCGcggCGgccgGUgCCGCu -3'
miRNA:   3'- aCGCaGgCGCCGCGCua-GCa---CA-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 88648 0.66 0.726918
Target:  5'- aGCG-CCGCGcGCccCGAgccCGUGUUCACg -3'
miRNA:   3'- aCGCaGGCGC-CGc-GCUa--GCACAGGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.