miRNA display CGI


Results 41 - 60 of 294 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 4483 0.71 0.427684
Target:  5'- gGCGUCgauCGCGcGCGUGG-CGuUGUCCGCg -3'
miRNA:   3'- aCGCAG---GCGC-CGCGCUaGC-ACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 77891 0.71 0.436432
Target:  5'- cGCGgCCGCGGCGCcgcaaacacCGUcGUCCACc -3'
miRNA:   3'- aCGCaGGCGCCGCGcua------GCA-CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 67835 0.71 0.445283
Target:  5'- -uUGUgCGCGGCGCGucgugCGUGUCgGCc -3'
miRNA:   3'- acGCAgGCGCCGCGCua---GCACAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 17161 0.71 0.454233
Target:  5'- -cCGUcacCCGCGGCGCGggCGUGggcagcccugCCGCg -3'
miRNA:   3'- acGCA---GGCGCCGCGCuaGCACa---------GGUG- -5'
23575 3' -59.6 NC_005261.1 + 28834 0.71 0.46328
Target:  5'- gGCGgCCGCGGCugagGCGGccgUCGUGgCCGCc -3'
miRNA:   3'- aCGCaGGCGCCG----CGCU---AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 133351 0.71 0.46328
Target:  5'- gGCGgCCGCGGCugagGCGGccgUCGUGgCCGCc -3'
miRNA:   3'- aCGCaGGCGCCG----CGCU---AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 122831 0.71 0.46328
Target:  5'- cGCG-CUGCGGCGCGGUCauacUCCAg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUAGcac-AGGUg -5'
23575 3' -59.6 NC_005261.1 + 107898 0.71 0.46328
Target:  5'- cGCuuGUCCGCGGcCGCGGccUCGg--CCACg -3'
miRNA:   3'- aCG--CAGGCGCC-GCGCU--AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 83603 0.71 0.472421
Target:  5'- cGCGUcgcucuccgCCGCGGCGUGGUCcagcgcgagGUCCAg -3'
miRNA:   3'- aCGCA---------GGCGCCGCGCUAGca-------CAGGUg -5'
23575 3' -59.6 NC_005261.1 + 66329 0.71 0.472421
Target:  5'- gUGCuggCCgGCGGCGCGGagcacuuuuUCGUGcCCGCg -3'
miRNA:   3'- -ACGca-GG-CGCCGCGCU---------AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 119053 0.71 0.472421
Target:  5'- cGCGcCCGCGGcCGCGcgugugcuuUCGUGgcccgggCCACg -3'
miRNA:   3'- aCGCaGGCGCC-GCGCu--------AGCACa------GGUG- -5'
23575 3' -59.6 NC_005261.1 + 125333 0.71 0.472421
Target:  5'- gGCGUCCGCaGCGCGcAggGcGUCCAg -3'
miRNA:   3'- aCGCAGGCGcCGCGC-UagCaCAGGUg -5'
23575 3' -59.6 NC_005261.1 + 28215 0.71 0.472421
Target:  5'- gGCGaaaggaCgGCGGCgccgGCGggCGUGUCCACg -3'
miRNA:   3'- aCGCa-----GgCGCCG----CGCuaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 116370 0.7 0.481651
Target:  5'- cGCGUUCGCGaGCGCGAgCGUcagCUGCg -3'
miRNA:   3'- aCGCAGGCGC-CGCGCUaGCAca-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 11853 0.7 0.481651
Target:  5'- cGCGUUCGCGaGCGCGAgCGUcagCUGCg -3'
miRNA:   3'- aCGCAGGCGC-CGCGCUaGCAca-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 46804 0.7 0.481651
Target:  5'- cGCGUucaCCGCGGCgGCG-UCGcGcUCCACg -3'
miRNA:   3'- aCGCA---GGCGCCG-CGCuAGCaC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 70474 0.7 0.481651
Target:  5'- cGCG-CCGCGgguGCGCGcgCGUGagCACg -3'
miRNA:   3'- aCGCaGGCGC---CGCGCuaGCACagGUG- -5'
23575 3' -59.6 NC_005261.1 + 132796 0.7 0.490033
Target:  5'- uUGCcgccgCCGCGGcCGCGGUCGUcuccuucGUUCGCg -3'
miRNA:   3'- -ACGca---GGCGCC-GCGCUAGCA-------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 28279 0.7 0.490033
Target:  5'- uUGCcgccgCCGCGGcCGCGGUCGUcuccuucGUUCGCg -3'
miRNA:   3'- -ACGca---GGCGCC-GCGCUAGCA-------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 27909 0.7 0.490968
Target:  5'- cGCGUCCgcgGCGGCGCGGUUGccguacUCgGCg -3'
miRNA:   3'- aCGCAGG---CGCCGCGCUAGCac----AGgUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.