miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 21775 0.68 0.627899
Target:  5'- gGCGagccgCCGCGGCGCGggCcg--CCGCa -3'
miRNA:   3'- aCGCa----GGCGCCGCGCuaGcacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 22783 0.67 0.70747
Target:  5'- gGCGgaggaguccggCCGCGaGCGCGAgcUCGgg-CCGCg -3'
miRNA:   3'- aCGCa----------GGCGC-CGCGCU--AGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 23343 0.7 0.509847
Target:  5'- cGCGg-CGCaGCGCGcgCGUGUCgGCc -3'
miRNA:   3'- aCGCagGCGcCGCGCuaGCACAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 24432 0.73 0.353882
Target:  5'- uUGCgGUCCGCGGCGauggaCGAggUGUGcUCCGCg -3'
miRNA:   3'- -ACG-CAGGCGCCGC-----GCUa-GCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 25623 0.68 0.617885
Target:  5'- --gGUgCGaGGCGCGGUCGUcgaagagcGUCCACa -3'
miRNA:   3'- acgCAgGCgCCGCGCUAGCA--------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 27909 0.7 0.490968
Target:  5'- cGCGUCCgcgGCGGCGCGGUUGccguacUCgGCg -3'
miRNA:   3'- aCGCAGG---CGCCGCGCUAGCac----AGgUG- -5'
23575 3' -59.6 NC_005261.1 + 28215 0.71 0.472421
Target:  5'- gGCGaaaggaCgGCGGCgccgGCGggCGUGUCCACg -3'
miRNA:   3'- aCGCa-----GgCGCCG----CGCuaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 28279 0.7 0.490033
Target:  5'- uUGCcgccgCCGCGGcCGCGGUCGUcuccuucGUUCGCg -3'
miRNA:   3'- -ACGca---GGCGCC-GCGCUAGCA-------CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 28618 0.67 0.657928
Target:  5'- gGCGgagCUGUGGCGC-AUgGUGgCCGCg -3'
miRNA:   3'- aCGCa--GGCGCCGCGcUAgCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 28772 0.7 0.500368
Target:  5'- gGCGccugggCCGCGGCGCGGgcgcUCGcGgCCGCg -3'
miRNA:   3'- aCGCa-----GGCGCCGCGCU----AGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 28834 0.71 0.46328
Target:  5'- gGCGgCCGCGGCugagGCGGccgUCGUGgCCGCc -3'
miRNA:   3'- aCGCaGGCGCCG----CGCU---AGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 29004 0.67 0.657928
Target:  5'- cGCG-CUGCaGCGCGcggCGUG-CCGCg -3'
miRNA:   3'- aCGCaGGCGcCGCGCua-GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 29418 0.68 0.607882
Target:  5'- cGCGgcggCCGCGGggccCGCGGcCGUGUUCGu -3'
miRNA:   3'- aCGCa---GGCGCC----GCGCUaGCACAGGUg -5'
23575 3' -59.6 NC_005261.1 + 29490 0.66 0.726918
Target:  5'- cGCGgacgCCGCGGCGCcgcCGcugGcCCGCg -3'
miRNA:   3'- aCGCa---GGCGCCGCGcuaGCa--CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 29746 0.66 0.746053
Target:  5'- aGCGU-CGCGGCGCG--CGUGcgcgCCGa -3'
miRNA:   3'- aCGCAgGCGCCGCGCuaGCACa---GGUg -5'
23575 3' -59.6 NC_005261.1 + 29806 0.68 0.607882
Target:  5'- gGCGcCgGCGGCGCGggCGcccgcgCCGCg -3'
miRNA:   3'- aCGCaGgCGCCGCGCuaGCaca---GGUG- -5'
23575 3' -59.6 NC_005261.1 + 30218 0.7 0.529022
Target:  5'- cGCGcUgGCGGCGCGAacCGUGgccCCGCu -3'
miRNA:   3'- aCGCaGgCGCCGCGCUa-GCACa--GGUG- -5'
23575 3' -59.6 NC_005261.1 + 30381 0.66 0.755481
Target:  5'- gGCG-CCGCGGCGCGGguggagGUGgaggaCAUg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUag----CACag---GUG- -5'
23575 3' -59.6 NC_005261.1 + 31328 0.68 0.647928
Target:  5'- cGCG-CCGCGGCGCGGaCGa---CGCa -3'
miRNA:   3'- aCGCaGGCGCCGCGCUaGCacagGUG- -5'
23575 3' -59.6 NC_005261.1 + 31617 0.67 0.69765
Target:  5'- cGCGgcUCCGCGGCGUcugGGaCGagGUCCAg -3'
miRNA:   3'- aCGC--AGGCGCCGCG---CUaGCa-CAGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.