miRNA display CGI


Results 41 - 60 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 119575 0.72 0.41904
Target:  5'- aUGCG-CUGCGaGCGCGAgacCGUGgCCGCc -3'
miRNA:   3'- -ACGCaGGCGC-CGCGCUa--GCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 119130 0.74 0.303004
Target:  5'- cGCGgCCGCGGCGCGGccaucUCGgaUCCGCc -3'
miRNA:   3'- aCGCaGGCGCCGCGCU-----AGCacAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 119053 0.71 0.472421
Target:  5'- cGCGcCCGCGGcCGCGcgugugcuuUCGUGgcccgggCCACg -3'
miRNA:   3'- aCGCaGGCGCC-GCGCu--------AGCACa------GGUG- -5'
23575 3' -59.6 NC_005261.1 + 118944 0.69 0.587935
Target:  5'- cGCGgcuggCCGCGGCGCa--CGUGgCCAa -3'
miRNA:   3'- aCGCa----GGCGCCGCGcuaGCACaGGUg -5'
23575 3' -59.6 NC_005261.1 + 118842 0.66 0.746053
Target:  5'- cGC-UCUGCGGCGCGGagggCGgcgcGcCCGCg -3'
miRNA:   3'- aCGcAGGCGCCGCGCUa---GCa---CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 118231 0.68 0.616884
Target:  5'- gUGCGggucaggggCCGCGGCcggggacgauaggGCGGUCGcUG-CCGCa -3'
miRNA:   3'- -ACGCa--------GGCGCCG-------------CGCUAGC-ACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 118061 0.67 0.657928
Target:  5'- gGCGgCCGCGGCaGCGGcCGcagCCGCg -3'
miRNA:   3'- aCGCaGGCGCCG-CGCUaGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 117504 0.75 0.276551
Target:  5'- uUGCGcCCGcCGGCGCcgccacgauGAgCGUGUCCACc -3'
miRNA:   3'- -ACGCaGGC-GCCGCG---------CUaGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 117040 0.74 0.324094
Target:  5'- aGCGUCCGCGGcCGCGcUCGcG-CCAg -3'
miRNA:   3'- aCGCAGGCGCC-GCGCuAGCaCaGGUg -5'
23575 3' -59.6 NC_005261.1 + 116370 0.7 0.481651
Target:  5'- cGCGUUCGCGaGCGCGAgCGUcagCUGCg -3'
miRNA:   3'- aCGCAGGCGC-CGCGCUaGCAca-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 115306 0.69 0.58694
Target:  5'- cGCGUCgGCGcacgucuGCGCGAUCGggggGUaCCGg -3'
miRNA:   3'- aCGCAGgCGC-------CGCGCUAGCa---CA-GGUg -5'
23575 3' -59.6 NC_005261.1 + 115213 1.09 0.001322
Target:  5'- gUGCGUCCGCGGCGCGAUCGUGUCCACu -3'
miRNA:   3'- -ACGCAGGCGCCGCGCUAGCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 115037 0.72 0.393757
Target:  5'- cUGCGggccCCGCGGCGCGcUCGcUGUCg-- -3'
miRNA:   3'- -ACGCa---GGCGCCGCGCuAGC-ACAGgug -5'
23575 3' -59.6 NC_005261.1 + 113036 0.68 0.617885
Target:  5'- aGCGggCCGC-GCGCGG-CGUGgcgcgCCACc -3'
miRNA:   3'- aCGCa-GGCGcCGCGCUaGCACa----GGUG- -5'
23575 3' -59.6 NC_005261.1 + 111669 0.68 0.63491
Target:  5'- cGCG-CCGCGGUggcggcguacgucgGCGAugUCGUGgaCCGCa -3'
miRNA:   3'- aCGCaGGCGCCG--------------CGCU--AGCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 109800 0.68 0.617885
Target:  5'- gGCcggCCGCGGUGCGcgCGgGUCCc- -3'
miRNA:   3'- aCGca-GGCGCCGCGCuaGCaCAGGug -5'
23575 3' -59.6 NC_005261.1 + 109321 0.67 0.667908
Target:  5'- gGCcUCCGCGaGCGCGGccgCGggGUCgGCg -3'
miRNA:   3'- aCGcAGGCGC-CGCGCUa--GCa-CAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 108755 0.78 0.171211
Target:  5'- gGCGUCCGCGGCGCGc-CGcG-CCACg -3'
miRNA:   3'- aCGCAGGCGCCGCGCuaGCaCaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 108734 0.7 0.529022
Target:  5'- gGCGU-CGCGGCGCGcgUacaccagGUCCACc -3'
miRNA:   3'- aCGCAgGCGCCGCGCuaGca-----CAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 108413 0.7 0.519399
Target:  5'- gGCGagCGCGGCGCGggCGc--CCGCg -3'
miRNA:   3'- aCGCagGCGCCGCGCuaGCacaGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.