miRNA display CGI


Results 21 - 40 of 294 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23575 3' -59.6 NC_005261.1 + 132350 0.67 0.687778
Target:  5'- aUGCGcagcuuccgCCGCGGCGCGcUCG---CCGCg -3'
miRNA:   3'- -ACGCa--------GGCGCCGCGCuAGCacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 131184 0.73 0.369485
Target:  5'- aGCGgcuacgcCCGCGGCGCGGUCGccgCCGg -3'
miRNA:   3'- aCGCa------GGCGCCGCGCUAGCacaGGUg -5'
23575 3' -59.6 NC_005261.1 + 129355 0.67 0.687778
Target:  5'- aGCGcccccuUCCGCGcgcgggucGCGCGGcuUCGgGUCCACc -3'
miRNA:   3'- aCGC------AGGCGC--------CGCGCU--AGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 128949 0.73 0.353882
Target:  5'- uUGCgGUCCGCGGCGauggaCGAggUGUGcUCCGCg -3'
miRNA:   3'- -ACG-CAGGCGCCGC-----GCUa-GCAC-AGGUG- -5'
23575 3' -59.6 NC_005261.1 + 127860 0.7 0.509847
Target:  5'- cGCGg-CGCaGCGCGcgCGUGUCgGCc -3'
miRNA:   3'- aCGCagGCGcCGCGCuaGCACAGgUG- -5'
23575 3' -59.6 NC_005261.1 + 126292 0.68 0.627899
Target:  5'- gGCGagccgCCGCGGCGCGggCcg--CCGCa -3'
miRNA:   3'- aCGCa----GGCGCCGCGCuaGcacaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 125919 0.67 0.70747
Target:  5'- cGCGcCCGcCGGCuacGCGccCGUGcCCGCg -3'
miRNA:   3'- aCGCaGGC-GCCG---CGCuaGCACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 125333 0.71 0.472421
Target:  5'- gGCGUCCGCaGCGCGcAggGcGUCCAg -3'
miRNA:   3'- aCGCAGGCGcCGCGC-UagCaCAGGUg -5'
23575 3' -59.6 NC_005261.1 + 125096 0.7 0.519399
Target:  5'- uUGCGgggcgcccccuUCCGgGGCGCGcucggguggugcGUCuGUGUCCAUa -3'
miRNA:   3'- -ACGC-----------AGGCgCCGCGC------------UAG-CACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 124200 0.73 0.346257
Target:  5'- cGCGUCCgGUGGCGUGAacugCGUGgcugCCAg -3'
miRNA:   3'- aCGCAGG-CGCCGCGCUa---GCACa---GGUg -5'
23575 3' -59.6 NC_005261.1 + 123686 0.66 0.764805
Target:  5'- -aCGUCC-CGGCGCucagCGUGggCCGCg -3'
miRNA:   3'- acGCAGGcGCCGCGcua-GCACa-GGUG- -5'
23575 3' -59.6 NC_005261.1 + 123520 0.67 0.681832
Target:  5'- cGCGUCCGCuagcaagcuguaccGCGCGAgCGUGcCCucGCg -3'
miRNA:   3'- aCGCAGGCGc-------------CGCGCUaGCACaGG--UG- -5'
23575 3' -59.6 NC_005261.1 + 123483 0.68 0.597896
Target:  5'- cGCGg-CGCGGCGcCGAUCGccccUG-CCACc -3'
miRNA:   3'- aCGCagGCGCCGC-GCUAGC----ACaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 122967 0.72 0.402075
Target:  5'- gGCGgcgCCGcCGGgGCGAUCGcgGcCCACu -3'
miRNA:   3'- aCGCa--GGC-GCCgCGCUAGCa-CaGGUG- -5'
23575 3' -59.6 NC_005261.1 + 122831 0.71 0.46328
Target:  5'- cGCG-CUGCGGCGCGGUCauacUCCAg -3'
miRNA:   3'- aCGCaGGCGCCGCGCUAGcac-AGGUg -5'
23575 3' -59.6 NC_005261.1 + 122744 0.67 0.687778
Target:  5'- -cCGcCCGCaGCaGCGGcgCGUGUCCGCc -3'
miRNA:   3'- acGCaGGCGcCG-CGCUa-GCACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 122708 0.68 0.597896
Target:  5'- cGCG-CCGcCGGcCGCGccGUCGaUGUUCACg -3'
miRNA:   3'- aCGCaGGC-GCC-GCGC--UAGC-ACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121638 0.66 0.717229
Target:  5'- gGCGgccgccgCCgGCGaGCGCGggC-UGUCCGCg -3'
miRNA:   3'- aCGCa------GG-CGC-CGCGCuaGcACAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 121076 0.66 0.717229
Target:  5'- cGCG-CCGCGG-GUGA-CG-GUCUACg -3'
miRNA:   3'- aCGCaGGCGCCgCGCUaGCaCAGGUG- -5'
23575 3' -59.6 NC_005261.1 + 120962 0.67 0.667908
Target:  5'- cGCGccCCGCGGgGCG--CGUGccgCCGCa -3'
miRNA:   3'- aCGCa-GGCGCCgCGCuaGCACa--GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.